PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100222520021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 338aa MW: 37318 Da PI: 7.7377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100222520021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00016	282	315	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +A+eYIk L Ote100222520021\|100222520021 282 LGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKLL 315 555666677777776.....8****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.077	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.27E-4	276	319	No hit	No description
SuperFamily	SSF47459	1.06E-9	276	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-6	281	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGNKFQGRVC GGNCWNSSRN LFSSSLCSAG LPWLNPSLIV DMKTTKSLSH DSDGGGSVML 60 QEAQKPQLTA NRNMPIDSTL DDWNQDWLHD SARSQENYSH IRQALNSSMN CRQNIADEEW 120 EFSADSPTKS LGQVCQSFLL EQHPSNLDSP LNTASYGLQQ TLLDSPNSGI NSTGSVLCKA 180 SSVMKPSLPT QQSAANNFQF INAPFCNATP QLIPSSLTKV RINQPNLSSK RENFVKIFSI 240 ITKTTGEAES MVEKGGDEPS FKRPRIETPS PLPTFKVRNE KLGDRVTALQ QLVSPFGKTD 300 TASVLHEAIE YIKLLHDQIT VLSTPYLKNC QPPLQRQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086152.1	7e-81	transcription factor bHLH112
TrEMBL	A0A4D8YWG4	1e-86	A0A4D8YWG4_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86