PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100222510011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 389aa    MW: 44295.2 Da    PI: 9.5955
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100222510011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.8e-11183239155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Ote100222510011|100222510011 183 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 239
                                   57*******************4444.2455535555.7799999*************98 PP
2AP247.83.7e-15284333355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100222510011|100222510011 284 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 333
                                   9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-8183239IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14183249IPR016177DNA-binding domain
CDDcd000189.06E-18183249No hitNo description
Gene3DG3DSA:3.30.730.101.7E-11184248IPR001471AP2/ERF domain
PROSITE profilePS5103217.016184247IPR001471AP2/ERF domain
SMARTSM003809.1E-22184253IPR001471AP2/ERF domain
PRINTSPR003672.6E-6185196IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-18282342IPR016177DNA-binding domain
CDDcd000181.29E-23282343No hitNo description
Gene3DG3DSA:3.30.730.102.7E-18283341IPR001471AP2/ERF domain
SMARTSM003801.5E-32283347IPR001471AP2/ERF domain
PROSITE profilePS5103219.506283341IPR001471AP2/ERF domain
PfamPF008479.0E-10284333IPR001471AP2/ERF domain
PRINTSPR003672.6E-6323343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MKSQPLRFPV NHALIISLLI LXXXXXXXXX XXXXXPAPPF GILEAFNRNN HSQEWNMNTF  60
SCSSQAMEDQ TRPKLENFLG VHQEQQKSNS YNMYQESEVT SHSNNSNIGL SMITNWLRNN  120
PAPPHAAEKE EXXXXXXXXX XXXXXXSMST GSQSENKVVE GQTGGAIESV PRKSIDTFGQ  180
RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEDKAARAY DLAALKYWGT  240
TTTTNFPISN YEKEIEEMKH MTRQEYVASL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI  300
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKSI LESTTLPIGG  360
AAKRLKDAEK AEMALNLHRT NESNLNLHV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084678.11e-178AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ8LSN21e-144BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A4D9AFZ90.0A0A4D9AFZ9_SALSN; AP2-like factor, ANT lineage
STRINGMigut.F01850.1.p1e-171(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131