PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100222360071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 209aa    MW: 23561.8 Da    PI: 8.6128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100222360071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-142266147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg+++  E++ +++++++ G++ W++Ia++++  Rt++++k++w++ 
  Ote100222360071|100222360071 22 RGNFSLLEEQTIIQLHALIGNR-WAAIASHLP-MRTDNEIKNYWNTC 66
                                  899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.051116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-10229IPR009057Homeodomain-like
SuperFamilySSF466899.61E-20376IPR009057Homeodomain-like
PROSITE profilePS5129421.5791771IPR017930Myb domain
SMARTSM007177.0E-132169IPR001005SANT/Myb domain
PfamPF002491.8E-132266IPR001005SANT/Myb domain
CDDcd001675.53E-102465No hitNo description
Gene3DG3DSA:1.10.10.605.5E-203068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
LKRCGKSCRL RWTNYLRPDI KRGNFSLLEE QTIIQLHALI GNRWAAIASH LPMRTDNEIK  60
NYWNTCLKKR LTKMGIDPIT HKPISLPQSK EFSNISHMAQ WESARVQAEA RLRRAVTPPP  120
PPPCLEWSNS APLILNQFSS SYMPYTPTVG LFDETSSSGV VGNPSSGYYD QNDIGGIMEL  180
DRLDLDHSAN YVDQASLGFP SFINGFIGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855393.17e-63PREDICTED: myb-related protein 308-like
SwissprotQ9LE633e-58MY106_ARATH; Transcription factor MYB106
TrEMBLA0A059PRI73e-77A0A059PRI7_SALMI; MYB-related transcription factor (Fragment)
STRINGMigut.E00076.1.p3e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154