PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100222360051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 241aa    MW: 27080.9 Da    PI: 8.1288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100222360051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-145498147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg+++  E++ +++++++ G++ W++Ia++++  Rt++++k++w++ 
  Ote100222360051|100222360051 54 RGNFSLLEEQTIIQLHALIGNR-WAAIASHLP-MRTDNEIKNYWNTC 98
                                  899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.542148IPR017877Myb-like domain
PROSITE profilePS512575129No hitNo description
Gene3DG3DSA:1.10.10.604.3E-103461IPR009057Homeodomain-like
SuperFamilySSF466897.7E-2034108IPR009057Homeodomain-like
PROSITE profilePS5129421.57949103IPR017930Myb domain
SMARTSM007177.0E-1353101IPR001005SANT/Myb domain
PfamPF002492.3E-135498IPR001005SANT/Myb domain
CDDcd001679.15E-105697No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2062100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MWKLETAQLS IPICSQESNG FLLSFSFSCV LGLKRCGKSC RLRWTNYLRP DIKRGNFSLL  60
EEQTIIQLHA LIGNRWAAIA SHLPMRTDNE IKNYWNTCLK KRLTKMGIDP ITHKPISLPQ  120
SKEFSNISHM AQWESARVQA EARLRRAVTP PPPPPCLEWS NSAPLILNQF SSSYMPYTPT  180
VGLFDETSSS GVVGNPSSGY YDQNDIGGIM ELDRLDLDHS ANYVDQASLG FPSFINGFIG  240
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-193510340108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855393.12e-63PREDICTED: myb-related protein 308-like
TrEMBLA0A059PRI72e-77A0A059PRI7_SALMI; MYB-related transcription factor (Fragment)
STRINGMigut.E00076.1.p9e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154