PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100221540161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 354aa    MW: 40474 Da    PI: 6.6049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100221540161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.83.4e-56251521129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdee++++yL +kv ++++ + ++i ++d++k+ePwdLpk++k +ekew+fF++rd+ky+tg r+nrat+sg
  Ote100221540161|100221540161  25 LPPGFRFHPTDEEIIMHYLLQKVIDRSFVA-KAIGDADLNKCEPWDLPKMAKMGEKEWFFFCQRDRKYPTGMRTNRATESG 104
                                   79*************************999.89***************999999*************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkdke+++ ++ lvg+kktLvfykgrapkgekt+Wvmhe+rle
  Ote100221540161|100221540161 105 YWKATGKDKEIYRGRKCLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 152
                                   *************99999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-6322176IPR003441NAC domain
PROSITE profilePS5100558.39625176IPR003441NAC domain
PfamPF023651.1E-2826151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEVGLGGGAS SSSMAKEEDD ELVELPPGFR FHPTDEEIIM HYLLQKVIDR SFVAKAIGDA  60
DLNKCEPWDL PKMAKMGEKE WFFFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYRGRK  120
CLVGMKKTLV FYKGRAPKGE KTNWVMHEFR LEGNFSDYNF SRSAKEEFVV CRVFDKNPVT  180
RRSPGMELSR IDSFIDRLLE EPTALPPLTD YNCLDEKPSS TFRAADHQRE PSAGVFLGDH  240
KVKMQYDQRN LFVPPQNYPI NSSSPYLVPQ NALRTSLPXX XXXXXXXXXX XXXAFEGANL  300
RPKMEHFSSN KSVMSHPHDT SGHEITSKKA AFDDDQEGLD FSPNISDLDS LWSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-49111771166NO APICAL MERISTEM PROTEIN
1ut4_B3e-49111771166NO APICAL MERISTEM PROTEIN
1ut7_A3e-49111771166NO APICAL MERISTEM PROTEIN
1ut7_B3e-49111771166NO APICAL MERISTEM PROTEIN
4dul_A3e-49111771166NAC domain-containing protein 19
4dul_B3e-49111771166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078584.11e-147NAC domain-containing protein 92
SwissprotQ9SQQ62e-97NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2G9GVZ81e-115A0A2G9GVZ8_9LAMI; Uncharacterized protein
STRINGGorai.007G267700.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]