PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100221470052

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 311aa MW: 33977.1 Da PI: 7.4413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100221470052	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.5e-15	45	94	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ ++K + a+ L ++++Y++ Lq Ote100221470052\|100221470052 45 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIQYVQFLQ 94 889***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-18	41	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-22	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.929	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.91E-15	45	98	No hit	No description
Pfam	PF00010	2.2E-12	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKSGKGHXXX XXXXXXXFGA KKDATSSANN SKADGKSSDK ANAVRSKHSV TEQRRRSKIN 60 ERFQILRELI PHSDQKRDTA SFLLEVIQYV QFLQEKVQKY EGSYQPWNSE PTKLMPWRNS 120 HWRVQNFVGQ KNGSGPGSTF PGRFDENNGA VESDHSRDGP SRPLNPHTEL PNKSMSMPFP 180 IPVSMANDGC FSHTLHGLPT SDAQSAECPI TVDGMNHQDD LTIEGGTISV SSVYSEGLLS 240 ALTQALESAS IDLSQASISV QINLGKRANI GGAPENAIAK DHVIAAPSNN QAYHDGASSE 300 DLDLAHKRPK T

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027151692.1	1e-135	transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	4e-92	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0H3Y8Y9	1e-165	A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.L01158.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]