PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100221370201

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 322aa MW: 35658 Da PI: 10.1284

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100221370201	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.5	1.9e-41	78	207	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 ++kkdrhski T++g+RdRRvRls+++a++fFdLq++LGfdk+skt++WLl+++k+aikel++++++ + + +++ sss+ Ote100221370201\|100221370201 78 TAKKDRHSKINTAQGPRDRRVRLSINIARKFFDLQEMLGFDKPSKTLDWLLTKSKAAIKELVQSKQNGS-GSGNGNGSSSS 157 78************************************************************77766.33222222222 PP TCP 83 snsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 s ++g+ ++ ++ +k++q+ a++al++ake t ekm+ k+ Ote100221370201\|100221370201 158 S--ENGADSRRKHGGKDKQTAASAALSPAKEXXXXXXXXXXXXTLEKMCFKQ 207 2..2335555566677777777778****999999999*****984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-38	78	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.912	80	138	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MLGRNTYLVP SSHHNLXXXX XXXXXXXXXX XXXXXXXXXX EEVFPSGFYL APALDNATFF 60 NQENGNPSLA AGFHRKPTAK KDRHSKINTA QGPRDRRVRL SINIARKFFD LQEMLGFDKP 120 SKTLDWLLTK SKAAIKELVQ SKQNGSGSGN GNGSSSSSEN GADSRRKHGG KDKQTAASAA 180 LSPAKEXXXX XXXXXXXXTL EKMCFKQLNG GGENHNQVDF LQLSAGSCSR NVKMSGGFCE 240 QINNPHCFLR NEGVNQGLID EPVVIKKKSK NPFFGFQQNL VLNSNSMAPS ANENWDVFGF 300 ASQSNLHAIL DHHKFINSNS NI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554786.1	2e-64	transcription factor CYCLOIDEA
TrEMBL	A0A096ZGF8	2e-78	A0A096ZGF8_OCIBA; TCP transcription factor (Fragment)
STRING	Migut.H00528.1.p	6e-52	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44