PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100220670011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 226aa MW: 26164.7 Da PI: 4.8065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100220670011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	52	96	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR+++N+++ Lr+++P+ +K++Ka+i + A+eYIksLq Ote100220670011\|100220670011 52 IISERNRRKKLNERLYALRSVVPNI-----TKMDKASIIRDAIEYIKSLQ 96 578*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.282	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	48	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.30E-14	49	100	No hit	No description
Pfam	PF00010	7.7E-12	51	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-18	52	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-16	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEIIDDDYAK YWESNMFLHN DELDSYFDEA ISVYYDSSSP DGVQSSPASK NIISERNRRK 60 KLNERLYALR SVVPNITKMD KASIIRDAIE YIKSLQDEER RIQDEISNLE SNHDFCDMDE 120 EATTFFSKPK RIRMEKLTPI EVLEFRVSNM GENVVVVSLA CSKRRDTMIR LCEAFESLKL 180 KIITCSINAF SGRLFKTVFL EGEEEEKDAL RVKIEAAIAA TSRLRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077906.1	1e-111	transcription factor bHLH35
Swissprot	Q2HIV9	4e-77	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A4D9A1F1	1e-124	A0A4D9A1F1_SALSN; Uncharacterized protein
STRING	XP_009603227.1	1e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2923	24	51