PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100220130011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 237aa MW: 26421.3 Da PI: 4.7154 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 78.3 | 1.3e-24 | 1 | 92 | 6 | 107 |
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++cAeav++++++la+al++++ la +++ +m+++a+yf+eALa+r++r l+ ++ ++ + + + + f+e Ote100220130011|100220130011 1 MACAEAVQQENFKLAEALVKNIGFLAVSQAGAMRKVATYFAEALARRIYR----LC----LTN--AQDFAFNDMLQMHFYE 71 68************************************************....22....222..2234455555567*** PP GRAS 87 vsPilkfshltaNqaIleave 107 ++P+lkf+h+taNqaIlea++ Ote100220130011|100220130011 72 TCPYLKFAHFTANQAILEAFA 92 *******************96 PP | |||||||
2 | GRAS | 136 | 4.1e-42 | 93 | 232 | 133 | 273 |
GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 a Rp+gpps+R+T+vg+p++++++ l+e+g++La++Ae+++v+fe++ lva++l+dl+ L++++gE++aVn++l+lh l Ote100220130011|100220130011 93 ALRPGGPPSFRLTAVGPPSYDNTDHLQEVGRKLAELAETINVEFEYRGLVANSLADLTAPLLQIREGETVAVNSILELHPL 173 58******************************************************************************* PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 l+ k++++++++vveqea+hn+ Flerf+eal+yys+lfdsle+ Ote100220130011|100220130011 174 LAXXXXXXX-XXXXXXXXKEVKAEILTVVEQEANHNGDVFLERFTEALHYYSTLFDSLES 232 *88877777.899999******************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.6E-22 | 1 | 92 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 27.275 | 1 | 237 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-39 | 93 | 232 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MACAEAVQQE NFKLAEALVK NIGFLAVSQA GAMRKVATYF AEALARRIYR LCLTNAQDFA 60 FNDMLQMHFY ETCPYLKFAH FTANQAILEA FAALRPGGPP SFRLTAVGPP SYDNTDHLQE 120 VGRKLAELAE TINVEFEYRG LVANSLADLT APLLQIREGE TVAVNSILEL HPLLAXXXXX 180 XXXXXXXXXX KEVKAEILTV VEQEANHNGD VFLERFTEAL HYYSTLFDSL ESCSNGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-31 | 3 | 230 | 25 | 276 | Protein SCARECROW |
5b3h_D | 2e-31 | 3 | 230 | 25 | 276 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070609.1 | 1e-127 | DELLA protein GAI1 | ||||
Swissprot | Q8S4W7 | 1e-116 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A2G9HQV2 | 1e-125 | A0A2G9HQV2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00445.1.p | 1e-120 | (Erythranthe guttata) |