PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100218930031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 362aa    MW: 41636 Da    PI: 6.7666
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100218930031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-082843221854
                                   HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Ote100218930031|100218930031 284 MFQNflHPYPKDAEKHLLALKSGLTRSQVSNWFINARVR 322
                                   5887779******************************88 PP
2BELL71.21.8e-23158226372
                          BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                   +e ++k+ +Llsll+ Vd++Y+q+ ++++t++s+F++v++l++ ++++++Al aiS  +r+L+++i+ +i
  Ote100218930031|100218930031 158 KEAESKRKHLLSLLQVVDDQYNQCLDEIHTIVSAFHVVTELDP-NLHARFALPAISLMYRNLREKISTHI 226
                                   6889***************************************.**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-1799224IPR006563POX domain
PfamPF075262.0E-21107223IPR006563POX domain
PROSITE profilePS5007111.013263326IPR001356Homeobox domain
CDDcd000862.24E-10266327No hitNo description
SMARTSM003891.7E-5266330IPR001356Homeobox domain
SuperFamilySSF466891.45E-15268335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-26269332IPR009057Homeodomain-like
PfamPF059201.0E-14283322IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQTDATGSHS IVADESSLLS VDYSDLVDRH IQNHVMAGFP MPPSLEDWRS SQSARASPYL  60
FEPSKTVVDS TFEGSDYGLQ GLPFDGMHQG PMMNEWMLTG QERLSKPSRF FQAMQEILAE  120
FACYALENVD HRPSFGSTNG LSDGLESEQR LVVRGGGKEA ESKRKHLLSL LQVVDDQYNQ  180
CLDEIHTIVS AFHVVTELDP NLHARFALPA ISLMYRNLRE KISTHILAMG AHHNEENAIE  240
ETTFDTSFIQ KQWTLQQLKK RDHQLWRPQR GLPERSVSVL RAWMFQNFLH PYPKDAEKHL  300
LALKSGLTRS QVSNWFINAR VRLWKPMIEE MYAEMNRRKA RRNEEEANGS HRSHLSRRFT  360
VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14272330563Homeobox protein Meis2
3k2a_B1e-14272330563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550152.11e-130homeobox protein ATH1-like
SwissprotP487317e-91ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A4D9AFS31e-136A0A4D9AFS3_SALSN; Uncharacterized protein
STRINGVIT_04s0008g00880.t011e-112(Vitis vinifera)
STRINGPOPTR_0018s05080.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]