PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100218900011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 539aa MW: 60002.4 Da PI: 9.1431

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100218900011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	321	368	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ote100218900011\|100218900011 321 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 368 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.56E-10	315	372	No hit	No description
SuperFamily	SSF47459	8.51E-17	315	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	317	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	321	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	323	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MDKDYFMNAG IPPPQPLHFE TSMPIPWSSD HQSFVNPNSN MEXXXXXXXX SNWSSTLSSS 60 TAAAGEAFAL RELIGKLGGG AGVAAPFAGN ANTTANDRSN SSPKLSLPIL DQISLPNLAS 120 SSALXXXXXX XXXXXPGFAE RAAKFSCFGS RSFNARNPPP QAAEAKLPRV SSTPSLKQNG 180 SPLQVKNSSQ LQMESRAFNG GNLVSDKKFN KMSGSSANSN EESSVSEQIP SGETGSMNSR 240 KRKAVSRVKT KDDRSNSPKR VEGDDDGNSK RSKPTENGEN QTKEEEECKD EIEKNKTNQK 300 PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI 360 INYVQSLQRQ VEFLSMKLAS VNPALDFNVE NLLSKDMFQQ NTTLPQPMYP MDSSAPAFYH 420 HQNVQHQQLH GTNISSAPLS QCSVDPTIPF DGFNENLPQX XXXXXXXFLI VNLLQRYDVC 480 ERKEFYPYIG KKRSPNFTLR CRSSFQHSLK MICTALSKWD LSRIQLTFQV XXXXXXXXX

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MDKDYFMNAG IPPPQPLHFE TSMPIPWSSD HQSFVNPNSN MEXXXXXXXX SNWSSTLSSS  60
TAAAGEAFAL RELIGKLGGG AGVAAPFAGN ANTTANDRSN SSPKLSLPIL DQISLPNLAS  120
SSALXXXXXX XXXXXPGFAE RAAKFSCFGS RSFNARNPPP QAAEAKLPRV SSTPSLKQNG  180
SPLQVKNSSQ LQMESRAFNG GNLVSDKKFN KMSGSSANSN EESSVSEQIP SGETGSMNSR  240
KRKAVSRVKT KDDRSNSPKR VEGDDDGNSK RSKPTENGEN QTKEEEECKD EIEKNKTNQK  300
PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI  360
INYVQSLQRQ VEFLSMKLAS VNPALDFNVE NLLSKDMFQQ NTTLPQPMYP MDSSAPAFYH  420
HQNVQHQQLH GTNISSAPLS QCSVDPTIPF DGFNENLPQX XXXXXXXFLI VNLLQRYDVC  480
ERKEFYPYIG KKRSPNFTLR CRSSFQHSLK MICTALSKWD LSRIQLTFQV XXXXXXXXX

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089038.1	1e-177	transcription factor bHLH62 isoform X2
TrEMBL	A0A2G9GX75	1e-179	A0A2G9GX75_9LAMI; Uncharacterized protein
STRING	POPTR_0002s24990.1	1e-120	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83