PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100218850131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26905.6 Da    PI: 9.7832
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100218850131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.72.8e-32959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+++
  Ote100218850131|100218850131  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFAT 59
                                  79***********************************************86 PP
2K-box101.31.3e-3379169798
                         K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                   +  +e++++s++qe++kLk+++e+Lqr+qRhllGedL++Ls keLq+Le+qLe +l + R++K+++++eq+eel++ke++l
  Ote100218850131|100218850131  79 N-GAEREMQSWHQEISKLKAKYESLQRTQRHLLGEDLGPLSPKELQNLEKQLEGALAQARQRKTHIMMEQMEELRRKERQL 158
                                   3.47889************************************************************************** PP

                         K-box  88 qeenkaLrkkl 98 
                                    + nk+L++++
  Ote100218850131|100218850131 159 GDMNKQLKMRV 169
                                   *******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.992161IPR002100Transcription factor, MADS-box
CDDcd002653.46E-45278No hitNo description
SuperFamilySSF554554.32E-34291IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-3082169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.96685179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFATT  60
STTETLERYQ RCSFNSQDNG AEREMQSWHQ EISKLKAKYE SLQRTQRHLL GEDLGPLSPK  120
ELQNLEKQLE GALAQARQRK THIMMEQMEE LRRKERQLGD MNKQLKMRVS LQMAPVEEQG  180
QCSRTLSCPW NAAGSSCFQP QPVLERGYEQ YNVGERSRSV TVDNNFIQGW SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-238717019102Developmental protein SEPALLATA 3
4ox0_B9e-238717019102Developmental protein SEPALLATA 3
4ox0_C9e-238717019102Developmental protein SEPALLATA 3
4ox0_D9e-238717019102Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843982.11e-127PREDICTED: MADS-box transcription factor 6
SwissprotQ8LLR11e-111MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A024FCF31e-127A0A024FCF3_9LAMI; MADS-box transcription factor SEP3.1
STRINGMigut.B01667.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]