PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100218710031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 643aa    MW: 71421.1 Da    PI: 7.9059
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100218710031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094845162254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yp+ +++  LA+++gLt +qV++WF N R +
  Ote100218710031|100218710031 484 HPYPTDTDKHMLATQTGLTRNQVSNWFINARVR 516
                                   89*****************************87 PP
2BELL105.34.1e-34339407472
                          BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                   e+ +k+akLl +++eV krYkqy++q+q+v+ssFe vagl sa+pY+slAlk iS+hFr+Lk+aia+q+
  Ote100218710031|100218710031 339 ENLQKRAKLLFMQDEVGKRYKQYHQQMQMVVSSFESVAGLTSATPYVSLALKMISKHFRSLKNAIADQL 407
                                   67789**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-40241405IPR006563POX domain
PfamPF075264.0E-39246404IPR006563POX domain
PROSITE profilePS5007111.742457520IPR001356Homeobox domain
CDDcd000861.12E-10460521No hitNo description
SMARTSM003891.9E-8460524IPR001356Homeobox domain
SuperFamilySSF466899.41E-17462526IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-28463524IPR009057Homeodomain-like
PfamPF059206.5E-18477516IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MDMSNFRPEH IAQQSRRDKL RIQQDLSPSH HHLGVYINNN LGQIPPHDAL TYESSDIRSC  60
RAGNICYDPS EFSEMINFSA NPHGVLKDGA IGHHQQHEKR ELVTSSNARS FGLELASLRQ  120
KSSSETGHGQ WVVGGSELLL LPAYADQMRL KTHSDMISRP VDGYSQWSSG EVHFAAVKDN  180
PNTQALSLSL SSVPSPKVHE IQTSEKDFQT RDVQDSRNWK PELFTQQPLT HRNPGPLGPF  240
TGYTTILRNS KFLRPAQMLL EELCCIARPK DIEICDVSDK IFEDVRVSRE AASSNGEQAS  300
GSATVNSGGA SCFMFDGSSD KCREAGGSSC SPSEVYRPEN LQKRAKLLFM QDEVGKRYKQ  360
YHQQMQMVVS SFESVAGLTS ATPYVSLALK MISKHFRSLK NAIADQLKSI KNALGEDSSS  420
PSAGTSGSKG DGSNVSMLKF FDQSFQKQKN LGILEGQHIW RPQRGLPERA VSVLRAWLFD  480
HFLHPYPTDT DKHMLATQTG LTRNQVSNWF INARVRVWKP MVEEIHMLET KGMQAESGSD  540
GGKTAVEEGR NQGDRLGKQQ VESSRVEPQG NQDKRSRIEY GVDGSLMGLV PSHRSGIEMG  600
GMGSVSLTLG LRQSAENAQR PQMQPELHLR PHFGGQIIRD YVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16466523158Homeobox protein Meis1
4xrs_B3e-16466523158Homeobox protein Meis1
5bng_A4e-16466524159Homeobox protein Meis2
5bng_B4e-16466524159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089262.10.0uncharacterized protein LOC105170277
TrEMBLA0A2G9HKT40.0A0A2G9HKT4_9LAMI; Transcription factor MEIS1
STRINGMigut.D02248.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227