PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100218640191

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CPP

Protein Properties

Length: 932aa MW: 101986 Da PI: 6.3973

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100218640191	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.9	2.6e-15	501	539	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCk+skClk+YC+Cfaag +C+e+C+C++C+N+ e Ote100218640191\|100218640191 501 CKHCNCKRSKCLKLYCDCFAAGIYCAESCSCQECFNRPE 539 89**********************************876 PP
2	TCR	25	3.7e-08	588	610	1	23
TCR 1 kekkgCnCkkskClkkYCeCfaa 23 ++kkgC+Ckks C kkYCeC++a Ote100218640191\|100218640191 588 RHKKGCKCKKSMCRKKYCECYQA 610 589******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.5E-16	499	540	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	25.678	500	634	IPR005172	CRC domain
Pfam	PF03638	1.8E-11	502	537	IPR005172	CRC domain
SMART	SM01114	0.0086	588	614	IPR033467	Tesmin/TSO1-like CXC domain

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MDSPESSKPT TTACETAPVQ VDRLQHMLLD VQSLVSKDSP VFSYISNLSP IPPVKASSVT 60 QGFPGLNSPP LVFTSPRLNL QRQPTSLKRV QYPRTSFPKF HEQFGDIKNS ATTIKGNEKL 120 DFQLSTRVVA SGEKAADSNS SVDELIQSPS GSHGQFLEDA IKVDSPNSKY SFDSTIKTSE 180 QNDHPEQTDH PSDVRTCSKE ILLKLEHEPN TGINEEVAAA PTVVCRQTEE VQNENILINV 240 SEPENEFKQG DGVSVDHSPK IGHELREVNA LVKPDEDDFI TELQNAETGI AAALDQSSHL 300 LTGPELIGKE NENFVATTGS TLTQPTLMEL QNDLKPFQNR GVRRRCLQFE DAESNVICNR 360 PAQDPSGCDG KISSSLEPPL MPIGLKLCPI DTLDSSIKIP KPSGIGLHLN SIVNTVQAGT 420 SAGINVKTAQ WDCVSATTDG NTNESHACVS VGSAMVLPND SVILNSNANR SAIGNKRKNT 480 EKESISLHVS RINAMDSGDG CKHCNCKRSK CLKLYCDCFA AGIYCAESCS CQECFNRPEY 540 EVTVIETRQK IESRDPFAFA PRVVKHVIDQ PTISCGEDGS NFTPSSARHK KGCKCKKSMC 600 RKKYCECYQA CVAYLQMLDV QMDAVVKDAK MSMAKREEGN EGKTRQVDLK ENVMTKVSLT 660 GEDAQETTDA SFVDNCEIAA ASGTHKFHPE FVNPHNLTPH TPAFQFSNHG KEASKAWFHS 720 GKYIQSPDSS FTYLPPYVMP LVTPRNSDNN VTIPESANNI LNLVSFDQES HHGSAGSVDG 780 FSSAYPQSGK MGHLSDISNL QKWDQSFSAK RNHLSGSSFI WRGSPITPMA EFDVGLSNST 840 QDDTPEILKD TSTPLNIVKA SSPNKKRVSP PHNRPHEFSS SSSVGVRTRK FTLKAVPSFP 900 PLTPYSATRY PFSHGNFEQS LVHLVSGVHF LP

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MDSPESSKPT TTACETAPVQ VDRLQHMLLD VQSLVSKDSP VFSYISNLSP IPPVKASSVT  60
QGFPGLNSPP LVFTSPRLNL QRQPTSLKRV QYPRTSFPKF HEQFGDIKNS ATTIKGNEKL  120
DFQLSTRVVA SGEKAADSNS SVDELIQSPS GSHGQFLEDA IKVDSPNSKY SFDSTIKTSE  180
QNDHPEQTDH PSDVRTCSKE ILLKLEHEPN TGINEEVAAA PTVVCRQTEE VQNENILINV  240
SEPENEFKQG DGVSVDHSPK IGHELREVNA LVKPDEDDFI TELQNAETGI AAALDQSSHL  300
LTGPELIGKE NENFVATTGS TLTQPTLMEL QNDLKPFQNR GVRRRCLQFE DAESNVICNR  360
PAQDPSGCDG KISSSLEPPL MPIGLKLCPI DTLDSSIKIP KPSGIGLHLN SIVNTVQAGT  420
SAGINVKTAQ WDCVSATTDG NTNESHACVS VGSAMVLPND SVILNSNANR SAIGNKRKNT  480
EKESISLHVS RINAMDSGDG CKHCNCKRSK CLKLYCDCFA AGIYCAESCS CQECFNRPEY  540
EVTVIETRQK IESRDPFAFA PRVVKHVIDQ PTISCGEDGS NFTPSSARHK KGCKCKKSMC  600
RKKYCECYQA CVAYLQMLDV QMDAVVKDAK MSMAKREEGN EGKTRQVDLK ENVMTKVSLT  660
GEDAQETTDA SFVDNCEIAA ASGTHKFHPE FVNPHNLTPH TPAFQFSNHG KEASKAWFHS  720
GKYIQSPDSS FTYLPPYVMP LVTPRNSDNN VTIPESANNI LNLVSFDQES HHGSAGSVDG  780
FSSAYPQSGK MGHLSDISNL QKWDQSFSAK RNHLSGSSFI WRGSPITPMA EFDVGLSNST  840
QDDTPEILKD TSTPLNIVKA SSPNKKRVSP PHNRPHEFSS SSSVGVRTRK FTLKAVPSFP  900
PLTPYSATRY PFSHGNFEQS LVHLVSGVHF LP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-14	502	610	12	105	Protein lin-54 homolog
5fd3_B	2e-14	502	610	12	105	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847197.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A4D8YET1	0.0	A0A4D8YET1_SALSN; Uncharacterized protein
STRING	Migut.E01471.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28