PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100218520011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family RAV
Protein Properties Length: 362aa    MW: 41999.2 Da    PI: 10.5428
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100218520011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-111260155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s++kGV   + +g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  Ote100218520011|100218520011 12 SRFKGVVSQP-NGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLRN 60
                                  789***8888.8******999......44**********99*************97 PP
2B369.93.4e-221232091192
                                   HHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                            B3  11 lksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                    k++rlv+pkkfa ++       g+    +++l++  +s rsW+++++y+k+s+++v+t+GW++F+++++Lk++D v+F+l
  Ote100218520011|100218520011 123 XKLNRLVIPKKFALKYfprisdrGN--VDDIELVFFERSMRSWNFRYCYWKSSQSFVFTRGWNRFAREKKLKSRDRVIFSL 201
                                   6889***************997443..5889*************************************************8 PP

                                   -SSSEE.. CS
                            B3  85 dgrsefel 92 
                                    +r +++l
  Ote100218520011|100218520011 202 YERGGQKL 209
                                   87766644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.82E-201270No hitNo description
SuperFamilySSF541711.18E-151269IPR016177DNA-binding domain
PfamPF008471.2E-61260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-161368IPR001471AP2/ERF domain
PROSITE profilePS5103216.5951368IPR001471AP2/ERF domain
SMARTSM003801.9E-181374IPR001471AP2/ERF domain
CDDcd100175.31E-16105212No hitNo description
SMARTSM010194.3E-10106215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758113217IPR003340B3 DNA binding domain
SuperFamilySSF1019369.68E-22123213IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-19123210IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-25123216IPR015300DNA-binding pseudobarrel domain
PfamPF022976.4E-9276335IPR003213Cytochrome c oxidase, subunit VIb
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004129Molecular Functioncytochrome-c oxidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKHRTSDATS GSRFKGVVSQ PNGHWGAQIY ANHQRIWLGT FKSEKEAAMA YDSAAIKLRN  60
GFANRNFQWT DITVREPSFQ DQAQDRQGLP LAALPGPPDT RLRQLFQKEL TXXXXXXXXX  120
XXXKLNRLVI PKKFALKYFP RISDRGNVDD IELVFFERSM RSWNFRYCYW KSSQSFVFTR  180
GWNRFAREKK LKSRDRVIFS LYERGGQKLC ILDVVKDDEL AKKKKQMAIA AFSSQSSDDV  240
RTDVLLQARL ACYKAINPTS ASILFPRFVI LLFPFFTARD AFYACVGREA NKKPTEIASV  300
GLLFPAECVR NREKYVNSCR ATWVKHFDRE YCRNKCGRRL LDDYEGRRGS LPQTCTFKSR  360
PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1912421125112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851375.14e-84AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P54e-62RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2G9HEB32e-78A0A2G9HEB3_9LAMI; Uncharacterized protein
STRINGMigut.K00338.1.p7e-74(Erythranthe guttata)