PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100218370041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | SRS | ||||||||
Protein Properties | Length: 172aa MW: 17349.3 Da PI: 8.4741 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 94.3 | 2.5e-29 | 5 | 105 | 64 | 153 |
DUF702 64 aasaaeaaskrkrelkskkqsalsstklssaesk.keletss..........lPeevsseavfrcvrvssvddgeeelaYq 133 +s++++ sk++r ++++++ s+t++s+++++ ++++tss lP +v+++avf+cvrv++vddg +e+aYq Ote100218370041|100218370041 5 GSSQSTSGSKKPRLGGASQTTTGSHTSTSNNTTPaRSFDTSSshqdasfkesLPGQVRAPAVFKCVRVTAVDDGADEYAYQ 85 4556777888888887777777777777766554156666668889999999***************************** PP DUF702 134 tavsigGhvfkGiLydqGle 153 ++v igGh+fkG+LydqG+e Ote100218370041|100218370041 86 ASVRIGGHIFKGFLYDQGVE 105 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.1E-26 | 6 | 105 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 5.8E-29 | 57 | 104 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
VATAGSSQST SGSKKPRLGG ASQTTTGSHT STSNNTTPAR SFDTSSSHQD ASFKESLPGQ 60 VRAPAVFKCV RVTAVDDGAD EYAYQASVRI GGHIFKGFLY DQGVEGRNGL PNLSELHLSG 120 GGGGGRNGGG SSSPPPVLDH NIYGGGGASS GGLLGGSTYG NXXXXXXXXX XL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835509.1 | 8e-62 | PREDICTED: uncharacterized protein LOC105956208 | ||||
Swissprot | Q94CK9 | 3e-42 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A4D9C4A5 | 3e-65 | A0A4D9C4A5_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00656.1.p | 6e-64 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7655 | 23 | 31 |
Publications ? help Back to Top | |||
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