PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100217860081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 275aa MW: 29759.8 Da PI: 9.6551

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100217860081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	92	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Ote100217860081\|100217860081 92 PWTEEEHKLFLIGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 136 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.292	85	141	IPR017930	Myb domain
SuperFamily	SSF46689	4.11E-17	87	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-16	88	139	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-9	89	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-11	91	136	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-11	92	136	IPR001005	SANT/Myb domain
CDD	cd00167	3.40E-9	92	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MPPSAESPAA GDGGEIMLFG VRVKVDPMRK SVSMNNLSEY DSVCNTLNLD EKNRKDPPKA 60 AKEVGGRSGY ASADDAAPPP GGGGADRKRG TPWTEEEHKL FLIGLQKVGK GDWRGISKNY 120 VKTRTPTQVA SHAQKYFLRR NNLNRRRRRS SLFDITTDSV AVPIEETRHC QEIPAQPPLP 180 VASSVNVFSA MPYPVTMAPV LLSVQGGNPS ENLGIGQNFL VNNSSAMLVH HVPVLSVPPT 240 SAMANLNLNQ QLPPDPSALS LRLFCHQASE MKIAS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853030.1	4e-97	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	5e-67	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A4D8YFX1	1e-110	A0A4D8YFX1_SALSN; Uncharacterized protein
STRING	Migut.D01891.1.p	1e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]