PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100217740121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

AP2

Protein Properties

Length: 370aa MW: 41352.4 Da PI: 6.6494

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100217740121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.1	1.9e-17	107	156	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ote100217740121\|100217740121 107 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 156 78*****************......55**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.96E-15	107	165	IPR016177	DNA-binding domain
Pfam	PF00847	4.0E-9	107	156	IPR001471	AP2/ERF domain
CDD	cd00018	1.15E-11	108	163	No hit	No description
PROSITE profile	PS51032	17.28	108	164	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.7E-17	108	164	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-30	108	170	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MFDLNLTLDS NGDDHFDADG WSRESSSNDD AVLAFNSDIS NSSDQAPIPS DSELVTRDLF 60 PVTRPGELDR CSEIQYSSPQ AAVQQELQQV QAVQARKSRR GPRSRSSQYR GVTFYRRTGR 120 WESHIWDCGK QVYLGGFDTA LAAARAYDRA AIKFRGVEAD INFNLNDYHD MKQMMNLSKE 180 EFVQTLRRQS NGFSRGSCKY RSVRWDARSG EHLGMKLISW HIPRVYDKAG VMCKGNEPVT 240 RFDPNTHDIG EATRHGTQHD LNLNLGMSAS SQNENGRLED SSKLNHVAQS STTSKLHMGS 300 NIIYDPPLEG VPTRFQHPYT AVNPNFAPNN EGMQGHDPTA QNTTAASSGF SSTPNTPTTY 360 SWINPYLPSS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MFDLNLTLDS NGDDHFDADG WSRESSSNDD AVLAFNSDIS NSSDQAPIPS DSELVTRDLF  60
PVTRPGELDR CSEIQYSSPQ AAVQQELQQV QAVQARKSRR GPRSRSSQYR GVTFYRRTGR  120
WESHIWDCGK QVYLGGFDTA LAAARAYDRA AIKFRGVEAD INFNLNDYHD MKQMMNLSKE  180
EFVQTLRRQS NGFSRGSCKY RSVRWDARSG EHLGMKLISW HIPRVYDKAG VMCKGNEPVT  240
RFDPNTHDIG EATRHGTQHD LNLNLGMSAS SQNENGRLED SSKLNHVAQS STTSKLHMGS  300
NIIYDPPLEG VPTRFQHPYT AVNPNFAPNN EGMQGHDPTA QNTTAASSGF SSTPNTPTTY  360
SWINPYLPSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250\|UniProtKB:P47927, ECO:0000250\|UniProtKB:Q2TQ34}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552183.1	1e-86	floral homeotic protein APETALA 2-like isoform X1
Swissprot	B8AXC3	2e-62	AP21_ORYSI; APETALA2-like protein 1
TrEMBL	A0A4D9AJE7	5e-92	A0A4D9AJE7_SALSN; AP2-like factor, euAP2 lineage
STRING	XP_009611308.1	1e-81	(Nicotiana tomentosiformis)