PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100216000021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HSF | ||||||||
Protein Properties | Length: 236aa MW: 26429.2 Da PI: 7.5085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 119.9 | 1.4e-37 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++ +++isw+e g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Ote100216000021|100216000021 10 FLTKTYHLVDDPASDDVISWNEAGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFA 81 9***************************************************************9999.........**** PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 +++Fk+g+kell +i+r+k++ Ote100216000021|100216000021 82 NENFKRGQKELLAQIRRRKTA 102 ******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-38 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.5E-60 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-34 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.6E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.4E-33 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAHRSVPAPF LTKTYHLVDD PASDDVISWN EAGTTFVVWK TAEFAKDLLP NYFKHNNFSS 60 FVRQLNTYGF RKTVPDKWEF ANENFKRGQK ELLAQIRRRK TATNEKAGAN DNVASPAISG 120 DDLGSSSTSS PDSKNPGSLE TQVSAQLADL SGENEKLRKN NEMLSSELAQ TKKQCDELIA 180 FLTQCVKVAP EQISRIMNLG GAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-27 | 5 | 104 | 16 | 125 | Heat shock factor protein 1 |
5d5u_B | 6e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099137.1 | 1e-121 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 2e-98 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A2G9GXX1 | 1e-124 | A0A2G9GXX1_9LAMI; Uncharacterized protein | ||||
STRING | EOX91407 | 1e-111 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9991 | 21 | 27 |
Publications ? help Back to Top | |||
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