PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100215050061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 348aa    MW: 39762.8 Da    PI: 7.0449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100215050061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.64.5e-44201462125
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                   +pGfrFhPt+eelv +yL+           +++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t
  Ote100215050061|100215050061  20 MPGFRFHPTEEELVEFYLRXXXXXXXxxxrFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVT 99 
                                   79*****************99888776544444.569999***********8778899*********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                                   +sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+e
  Ote100215050061|100215050061 100 TSGYWKATGADRMIRSENLRSIGLKKTLVFYSGKAPKGIRTSWIMNE 146
                                   *********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.5119175IPR003441NAC domain
SuperFamilySSF1019418.76E-4819174IPR003441NAC domain
PfamPF023652.3E-2021146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNNQEDTNSK QDDHENDVVM PGFRFHPTEE ELVEFYLRXX XXXXXXXXRF NVELITFLDL  60
YRYDPWELPA LAAIGEKEWY FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRSENLRS  120
IGLKKTLVFY SGKAPKGIRT SWIMNEGFES LKSNLNRSLT HEINAEISLC RVYKRAGVED  180
HPSLPRCLPR KPPETTTAAA SSSRLLFYGG DTAAEAKISP NIGTSLVHRN SYSINPLAPT  240
VEGHHHHTDS CPTIFAAAAG SSSSAIDDLH KLVNNYSSQQ QVAINQETHH HYNLSNVPNL  300
LPHLPVLQPE NVXXXXXXXX XXXXXYSDRL WEWNAVPEAG KDYNNLFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-472117519165NO APICAL MERISTEM PROTEIN
1ut4_B6e-472117519165NO APICAL MERISTEM PROTEIN
1ut7_A6e-472117519165NO APICAL MERISTEM PROTEIN
1ut7_B6e-472117519165NO APICAL MERISTEM PROTEIN
3swm_A7e-472117522168NAC domain-containing protein 19
3swm_B7e-472117522168NAC domain-containing protein 19
3swm_C7e-472117522168NAC domain-containing protein 19
3swm_D7e-472117522168NAC domain-containing protein 19
3swp_A7e-472117522168NAC domain-containing protein 19
3swp_B7e-472117522168NAC domain-containing protein 19
3swp_C7e-472117522168NAC domain-containing protein 19
3swp_D7e-472117522168NAC domain-containing protein 19
4dul_A6e-472117519165NAC domain-containing protein 19
4dul_B6e-472117519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087598.11e-127NAC domain-containing protein 35
TrEMBLA0A2U5GF651e-147A0A2U5GF65_SALMI; NAC transcription factor 5
STRINGEOY263921e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446