PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100214790021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 278aa MW: 30613.8 Da PI: 10.6172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100214790021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.7e-06	113	154	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++iN ++ L++l+P + +k a++L + +++++ Lq Ote100214790021\|100214790021 113 RARREKINARMKLLQDLVPGC----NKISGTAMVLDEIINHVQALQ 154 99****************9....89999***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-12	103	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.557	103	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	107	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.93E-6	108	158	No hit	No description
SMART	SM00353	1.0E-5	109	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MPPPIFPSDT PLIDRASMFS VFASADKPPM RIDSMKQEPP ESEHHRNSSS PAASNQSLKS 60 GKRKEREKTV KETNKKSKKA AANETSDGSG KLPYVHIRAG RGKATDGHSL GKRARREKIN 120 ARMKLLQDLV PGCNKISGTA MVLDEIINHV QALQRQVEFL SMRLATVNPR IDFNVDAPLA 180 ADSDNSYLGM FAPSVLLDGQ TNGSRQHQYQ QQQQQCLLNG LQRLSIGSSN FITPETSLLS 240 SNSPENSGKI TLSKYGIFSA LKPAKNGALK WGWRCRRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078863.1	1e-110	transcription factor bHLH48
Swissprot	Q8VZ02	1e-55	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0H3YB14	1e-108	A0A0H3YB14_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.K00063.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]