PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100214620031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28979.4 Da PI: 9.8763 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.2 | 2.5e-14 | 9 | 48 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+i +++ r+ tf +R ++KKA+ELS+LC++e+ vi+ Ote100214620031|100214620031 9 KQILSERVRKSTFKRRVDSLFKKAHELSILCGVEIIVIVR 48 56788999******************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-17 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.46 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.51E-18 | 3 | 62 | No hit | No description |
Pfam | PF00319 | 1.9E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MPRHKTKHKQ ILSERVRKST FKRRVDSLFK KAHELSILCG VEIIVIVRDP KESHPSVWPS 60 HDRAMNGVMK FLARSKEAGP KKMVLHEKFL NDKLKGLTER LLKLRKKNEE TEIGFLMNRL 120 SEDGAFNELD MRQLIGLDQF VDEKLKKLES RYDELVGMQN QVSHTDNSRH FQMTTPAIVR 180 MENASVDFGT KSIAALAGDM TDERWFGNGM PCIQNSFGMS RGFNEVAVPF IEGNQDAVPN 240 EFGRVWPTIF YP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8ZWV5 | 1e-112 | A0A4D8ZWV5_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |