PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100214540101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9187.71 Da PI: 10.5691 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3e-20 | 9 | 44 | 1 | 36 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36 k+i+n + rqvtfskRr g++KKAeEL vLCda+va Ote100214540101|100214540101 9 KKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVA 44 68********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-21 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-19 | 10 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELAVLCD ADVAXXXXXX XXXXXXSSSP 60 PPANSSSMLA PVEVWIMEKK W |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963363.1 | 4e-23 | MADS-box protein JOINTLESS | ||||
Refseq | XP_015963364.1 | 4e-23 | MADS-box protein JOINTLESS | ||||
Refseq | XP_016201055.1 | 4e-23 | MADS-box protein JOINTLESS | ||||
Refseq | XP_016201056.1 | 4e-23 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 2e-23 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2U1M229 | 1e-22 | A0A2U1M229_ARTAN; Transcription factor, K-box | ||||
TrEMBL | S4X169 | 1e-22 | S4X169_SOYBN; K-box region and MADS-box transcription factor family protein (Fragment) | ||||
TrEMBL | S4X177 | 1e-22 | S4X177_GLYSO; K-box region and MADS-box transcription factor family protein (Fragment) | ||||
STRING | VIT_00s0313g00070.t01 | 2e-22 | (Vitis vinifera) | ||||
STRING | Lus10025719 | 2e-22 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |