PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100214420141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WOX | ||||||||
Protein Properties | Length: 210aa MW: 23981.2 Da PI: 10.4399 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.5 | 2.6e-14 | 2 | 45 | 19 | 57 |
HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++ +r+p+a++++++A+kl +++ ++V++WFqN++a++++ Ote100214420141|100214420141 2 YRRgTRTPTADQIQQIAAKLrrfgKIEGKNVFYWFQNHKARDRQ 45 55559************************************996 PP | |||||||
2 | Wus_type_Homeobox | 82.5 | 5.1e-27 | 1 | 47 | 19 | 65 |
Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +y++G+rtP++++iq+i+a+L+++Gkie+kNVfyWFQN+kaR+rqk+ Ote100214420141|100214420141 1 MYRRGTRTPTADQIQQIAAKLRRFGKIEGKNVFYWFQNHKARDRQKK 47 8********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.847 | 1 | 46 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.2E-12 | 2 | 45 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.27E-7 | 6 | 52 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-5 | 6 | 45 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MYRRGTRTPT ADQIQQIAAK LRRFGKIEGK NVFYWFQNHK ARDRQKKRRQ LQLLPHPSKQ 60 SGLSRKYLGM DQQPGNVTTS SKSSTSSKCE MELQQQSTET ANRTTKSSCR ALDLSSSMSP 120 NVSMNRTMDQ QENAYPFVAL NKLLTPKKHD DVIIESEIKE NRTLELFPVR SASLMSSTFT 180 CSSKEEMRDV SSVGTDLVPS QFFEFLPTKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070619.1 | 4e-55 | WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A4D9BQP0 | 3e-56 | A0A4D9BQP0_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |