PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100214300091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 624aa    MW: 69539.3 Da    PI: 6.3434
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100214300091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10191247155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Ote100214300091|100214300091 191 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 247
                                   57*******************5444.2455535555.7799999*************98 PP
2AP247.73.9e-15290341155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100214300091|100214300091 290 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 341
                                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-14191257IPR016177DNA-binding domain
PfamPF008473.3E-8191247IPR001471AP2/ERF domain
CDDcd000182.75E-18191257No hitNo description
PROSITE profilePS5103217.108192255IPR001471AP2/ERF domain
SMARTSM003803.6E-22192261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-11192256IPR001471AP2/ERF domain
PRINTSPR003676.0E-6193204IPR001471AP2/ERF domain
CDDcd000181.31E-24290351No hitNo description
SuperFamilySSF541718.5E-18290350IPR016177DNA-binding domain
PfamPF008478.5E-10290341IPR001471AP2/ERF domain
PROSITE profilePS5103219.348291349IPR001471AP2/ERF domain
SMARTSM003803.5E-33291355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18291349IPR001471AP2/ERF domain
PRINTSPR003676.0E-6331351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGSMNNWLGF SPTPQELQDH PQTAVPQLGF SSDEISTAQI SGESCFGAPP FGILEAFNRN  60
THSQDWNANT FSCSTQDLED QNRPKLENFL GVHQEQKSNS NLYQLNMYQE NDANVGNNSL  120
PIITNWLRNN PAPPHAAETN EAPPPAQTLS LSMSMDSPLQ PDTKAVEAQT SGGATESMPR  180
RSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL  240
AALKYWGTTT TTNFPISNYD KEIEEMKHMT RQEFVASIRR KSSGFSRGAS IYRGVTRHHQ  300
HGRWQARIGR VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFEI NRYDVKSILE  360
SSTLPIRGAA KRLKDAENSE MVALDLHRSN ESNLNLHLTE GQMSGYGSSN AHAWPTVAFQ  420
PPQPLSMYPY AAHQMLWCKQ EQDLYGFNEI NHQLQLGNTH NFLQPSVLHN IMEHSSGSNS  480
VVYGNNDGNV VPMIAQDGDQ SHGNGLDYEG VFGSADAYQQ ARNMYNYHQS HHSSSNLAKT  540
SNLYEQGSSS TDWIPTAVPT ARTNNDAGSH GASTFTVWND TPQGRDIRST HVLAYVITLG  600
HYGLEFINSQ WEMSSLAMNF GNSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077145.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ6PQQ41e-149BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A4D9ASR80.0A0A4D9ASR8_SALSN; AP2-like factor, ANT lineage
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]