PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100213650041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 299aa MW: 33360.1 Da PI: 8.973 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.6e-09 | 100 | 132 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gLt +qV++WF N R + Ote100213650041|100213650041 100 HPYPKDTDKIVLAKQTGLTRSQVSNWFINARVR 132 89*****************************88 PP | |||||||
2 | BELL | 55 | 2.1e-18 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+vis e++ag gsak Yt+lAl +iS++FrcLkdai qi Ote100213650041|100213650041 1 MQMVISWLEQAAGEGSAKTYTALALLTISKQFRCLKDAILAQI 43 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 4.8E-13 | 1 | 39 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.499 | 73 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-8 | 76 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.86E-12 | 77 | 137 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-17 | 78 | 143 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-28 | 80 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 93 | 132 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MQMVISWLEQ AAGEGSAKTY TALALLTISK QFRCLKDAIL AQILVEEDSL GGNIHGSRLK 60 YIDNKLRRMM IHHDALRPHR GLPDRSVSIL RAWLFDHFLH PYPKDTDKIV LAKQTGLTRS 120 QVSNWFINAR VRLWKPMVEE MYAEEVKGSD DEMARKSKVP TEIENQNKCK LENKNKTSST 180 APAEVTVRSN IGLKKSQNND VSQSPNTMNP SLDVAMNLFA WYPIVQPPYS SNSVSLTLGL 240 ENFPISPANQ TMHLGGGIHT AQLNDVALPT SAHYIGLYDS IHIHNGKSSA AQLLPDFAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-16 | 82 | 140 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 9e-16 | 82 | 140 | 5 | 63 | Homeobox protein Meis2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842437.1 | 4e-90 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_022842438.1 | 4e-90 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_022842439.1 | 4e-90 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_022842440.1 | 4e-90 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 7e-61 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A4D9AF44 | 2e-94 | A0A4D9AF44_SALSN; Uncharacterized protein | ||||
STRING | XP_009628712.1 | 1e-88 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Publications ? help Back to Top | |||
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