PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100213650041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 299aa    MW: 33360.1 Da    PI: 8.973
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100213650041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-091001322254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yp+ +++  LAk++gLt +qV++WF N R +
  Ote100213650041|100213650041 100 HPYPKDTDKIVLAKQTGLTRSQVSNWFINARVR 132
                                   89*****************************88 PP

2BELL552.1e-181433072
                          BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                                  +q+vis  e++ag gsak Yt+lAl +iS++FrcLkdai  qi
  Ote100213650041|100213650041  1 MQMVISWLEQAAGEGSAKTYTALALLTISKQFRCLKDAILAQI 43
                                  9****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.8E-13139IPR006563POX domain
PROSITE profilePS5007111.49973136IPR001356Homeobox domain
SMARTSM003893.2E-876140IPR001356Homeobox domain
CDDcd000864.86E-1277137No hitNo description
SuperFamilySSF466891.45E-1778143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-2880142IPR009057Homeodomain-like
PfamPF059204.3E-1893132IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQMVISWLEQ AAGEGSAKTY TALALLTISK QFRCLKDAIL AQILVEEDSL GGNIHGSRLK  60
YIDNKLRRMM IHHDALRPHR GLPDRSVSIL RAWLFDHFLH PYPKDTDKIV LAKQTGLTRS  120
QVSNWFINAR VRLWKPMVEE MYAEEVKGSD DEMARKSKVP TEIENQNKCK LENKNKTSST  180
APAEVTVRSN IGLKKSQNND VSQSPNTMNP SLDVAMNLFA WYPIVQPPYS SNSVSLTLGL  240
ENFPISPANQ TMHLGGGIHT AQLNDVALPT SAHYIGLYDS IHIHNGKSSA AQLLPDFAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-1682140563Homeobox protein Meis2
3k2a_B9e-1682140563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842437.14e-90BEL1-like homeodomain protein 1
RefseqXP_022842438.14e-90BEL1-like homeodomain protein 1
RefseqXP_022842439.14e-90BEL1-like homeodomain protein 1
RefseqXP_022842440.14e-90BEL1-like homeodomain protein 1
SwissprotQ9SJ567e-61BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A4D9AF442e-94A0A4D9AF44_SALSN; Uncharacterized protein
STRINGXP_009628712.11e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]