PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100213510161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LSD | ||||||||
Protein Properties | Length: 166aa MW: 18522.6 Da PI: 8.5604 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.2 | 3.5e-15 | 107 | 130 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ Ote100213510161|100213510161 107 CGNCHTTLMYPYGAPSVKCAVCQY 130 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.5E-11 | 104 | 133 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.6E-14 | 107 | 131 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSVAPYVIPS PQFPLKVNFS DFSYQYRDAI LAIAVNVMLD LMNLNLLNGD GPTDMWRLPY 60 TLDVYSWCFK CEMLMLSHSK PSASYWVYKK TNYQKTITTA NIAHINCGNC HTTLMYPYGA 120 PSVKCAVCQY ITNVNMGNVR VPLPMHRPIG PASPASMPSA STVSQP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2H5N0N9 | 1e-30 | A0A2H5N0N9_CITUN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |