PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100213510051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LSD

Protein Properties

Length: 382aa MW: 42557.5 Da PI: 9.9854

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100213510051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.7	1.1e-14	290	313	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ Ote100213510051\|100213510051 290 CGNCHTTLMYPYGAPSVKCAVCQY 313 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01199	8.1E-31	1	85	IPR008195	Ribosomal protein L34Ae
PRINTS	PR01250	1.8E-24	13	26	IPR008195	Ribosomal protein L34Ae
PROSITE pattern	PS01145	0	15	28	IPR018065	Ribosomal protein L34e, conserved site
PRINTS	PR01250	1.8E-24	26	43	IPR008195	Ribosomal protein L34Ae
PRINTS	PR01250	1.8E-24	44	54	IPR008195	Ribosomal protein L34Ae
PRINTS	PR01250	1.8E-24	66	88	IPR008195	Ribosomal protein L34Ae
TIGRFAMs	TIGR01053	8.2E-11	287	316	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-13	290	314	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006412	Biological Process	translation
GO:0005840	Cellular Component	ribosome
GO:0003735	Molecular Function	structural constituent of ribosome

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MVQRLTYRTQ HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPA 60 EYKRSRLPRN ERTINRPYGG VLSGTADHKS FLGGRAKDRE EGVEDTECQR KARIQELKRS 120 WLSVFCEPLD FKCGKRKCRA RWCAAGAGAF SCTRVGPPMS VAPYVIPSPQ FPLKMMMIIE 180 EVPSAGFDFV GDIMLRGPVS YCVEILRDYR DAILAIAVNV MLDLMNLNLL NGDGPTDMWR 240 LPYTLDVYSW CFKCEMLMLS HSKPSASYWV YKKTNYQKTI TTANIAHINC GNCHTTLMYP 300 YGAPSVKCAV CQYITNVNMG NVRVPLPMHR PIGPASPASM PSASTPLPNS QSQTVVVENP 360 MSVDKSGKLV SNVVVGITTD KK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MVQRLTYRTQ HSYATKSNQH RIVKTPGGKL VYQTTKKRAS GPKCPVTGKR IQGIPHLRPA  60
EYKRSRLPRN ERTINRPYGG VLSGTADHKS FLGGRAKDRE EGVEDTECQR KARIQELKRS  120
WLSVFCEPLD FKCGKRKCRA RWCAAGAGAF SCTRVGPPMS VAPYVIPSPQ FPLKMMMIIE  180
EVPSAGFDFV GDIMLRGPVS YCVEILRDYR DAILAIAVNV MLDLMNLNLL NGDGPTDMWR  240
LPYTLDVYSW CFKCEMLMLS HSKPSASYWV YKKTNYQKTI TTANIAHINC GNCHTTLMYP  300
YGAPSVKCAV CQYITNVNMG NVRVPLPMHR PIGPASPASM PSASTPLPNS QSQTVVVENP  360
MSVDKSGKLV SNVVVGITTD KK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4v3p_Li	1e-45	1	92	1	92	Ribosomal protein l34
4v7e_Cg	1e-45	1	92	1	92	60S ribosomal protein L34E

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67