PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100213490071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 467aa MW: 51454.8 Da PI: 6.6154

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100213490071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	185	229	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 k+ rr+++NReAAr+sR RKka++++Le +L++ ++Lkk+ Ote100213490071\|100213490071 185 QKALRRLAQNREAARKSRMRKKAYLQQLESSRLKLTQLEQDLKKT 229 5889**************************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-8	182	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.393	184	228	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.4E-8	186	230	No hit	No description
SuperFamily	SSF57959	4.71E-7	186	229	No hit	No description
Pfam	PF00170	9.2E-7	186	229	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.97E-20	186	235	No hit	No description
PROSITE pattern	PS00036	0	189	204	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-30	269	342	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MHSFKAAVTQ AVALTTSDLY CHSQSPFFLR GEEGGRNEER FSDLGELEQS AGHGFHHDGG 60 VNLSRSSMYN DLKASNVSAV SSNLHFGGLN NSLGSAEMVS TGTGVDSGPF MPHKGAIVEI 120 DGGGGGAGGG GLFDNWGDSG VVADHSQQTD TSTDTDDKNQ YPGVHNDRLM VVDSMDQMKG 180 KIGDQKALRR LAQNREAARK SRMRKKAYLQ QLESSRLKLT QLEQDLKKTR HQGIFAASGF 240 SADYSLGGNG ALAFDIDYAR WLDEHHRVID ELRTAVNSHV GEIELRLLVE GVMSHYDEIF 300 RLKSQAAKSD VFHMLSGMWK TPVERCFMWL GGFRCSEILK ILGNQIEPLT EQQLVGICNL 360 QQSSQQAEDA LSQGMEALQQ SLVETLSSNA RNSGNVADYM GQMAIAMSKL TTLENFLHQA 420 DLLRQQTLQQ LQRILTTRQA ARALLAINDY RSRLRALSCL WLARPKE

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MHSFKAAVTQ AVALTTSDLY CHSQSPFFLR GEEGGRNEER FSDLGELEQS AGHGFHHDGG  60
VNLSRSSMYN DLKASNVSAV SSNLHFGGLN NSLGSAEMVS TGTGVDSGPF MPHKGAIVEI  120
DGGGGGAGGG GLFDNWGDSG VVADHSQQTD TSTDTDDKNQ YPGVHNDRLM VVDSMDQMKG  180
KIGDQKALRR LAQNREAARK SRMRKKAYLQ QLESSRLKLT QLEQDLKKTR HQGIFAASGF  240
SADYSLGGNG ALAFDIDYAR WLDEHHRVID ELRTAVNSHV GEIELRLLVE GVMSHYDEIF  300
RLKSQAAKSD VFHMLSGMWK TPVERCFMWL GGFRCSEILK ILGNQIEPLT EQQLVGICNL  360
QQSSQQAEDA LSQGMEALQQ SLVETLSSNA RNSGNVADYM GQMAIAMSKL TTLENFLHQA  420
DLLRQQTLQQ LQRILTTRQA ARALLAINDY RSRLRALSCL WLARPKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077152.1	0.0	transcription factor HBP-1b(c38)-like
Swissprot	P23923	1e-161	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
Swissprot	Q41558	1e-159	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A4D9A4X8	0.0	A0A4D9A4X8_SALSN; Transcription factor TGA
STRING	VIT_01s0011g03230.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]