PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100211340061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 193aa MW: 22035.6 Da PI: 4.7615

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100211340061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	13	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g+W++eEd +l ++ ++G +W++ ++ g ++R++k+c++rw +yl Ote100211340061\|100211340061 13 KGAWSEEEDNKLRSYILRYGHWNWRLLPKFAGnnfrLTRCGKSCRLRWMNYL 64 79****************99**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-20	4	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.912	8	68	IPR017930	Myb domain
SMART	SM00717	6.6E-11	12	66	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-13	13	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.27E-20	14	91	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-8	15	64	No hit	No description
PROSITE profile	PS50090	4.135	65	92	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-8	68	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MRKPCVDENG VKKGAWSEEE DNKLRSYILR YGHWNWRLLP KFAGNNFRLT RCGKSCRLRW 60 MNYLKPGLKR GSFTKEEEDL IATLHHELGN NKTAPAENAS SENSDRLMGE IPGTVNSENP 120 ATGIWDSEDS ASSESMLWAE EPAMNDGRNE MMAEGMEGIS FWTEPFLVDN SYAQDHIHSF 180 SPFMEEAAVY LFT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-12	13	90	7	79	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269\|PubMed:24278034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269\|PubMed:15489280, ECO:0000269\|PubMed:18088336, ECO:0000269\|PubMed:24278034, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027170194.1	3e-45	transcription factor MYB13-like
Swissprot	Q9LTV4	5e-35	MYB10_ARATH; Transcription factor MYB10
TrEMBL	A0A059PRS9	7e-57	A0A059PRS9_SALMI; MYB-related transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]