PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100211160141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 325aa MW: 36253.4 Da PI: 7.3024

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100211160141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7e-10	49	98	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +v+ +k+L Ote100211160141\|100211160141 49 RKVQKADREKLRRDRLNEQFMELGNALDPD----RPKNDKASILSDTVQMLKDL 98 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-13	48	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.236	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-12	48	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-8	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.12E-8	49	103	No hit	No description
SMART	SM00353	1.4E-7	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDQLNHNSHF QPLANSSSFQ HAPDGRVPPT RPNPDCRMEA EGKDTVTARK VQKADREKLR 60 RDRLNEQFME LGNALDPDRP KNDKASILSD TVQMLKDLSA QVERLKSEYA ALTEESRELT 120 QEKNDLREEK ASLKSDIENL NAQYLQRMRA MYPWGGMDHS VMMHPPSYPF PMPVPVATGS 180 IPLHPSLQPY PFYGNQNPAV VPNHCSTYVP YMAHNPMVEQ QSTQHVSQVM QQGARSNKPD 240 PRNKSSDVES RIEKSDDSND ITTDLELKTP GSTSEQDSSV KLKKAKKIAR KETSLTDRSS 300 SSGCSSSQSV QAASSNSVIG GKKTD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092862.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	4e-92	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0H3Y7L3	0.0	A0A0H3Y7L3_SALMI; BHLH transcription factor 10
STRING	Solyc01g111130.2.1	1e-137	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]