PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100211060061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CAMTA

Protein Properties

Length: 939aa MW: 105348 Da PI: 5.5162

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100211060061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169.9	3.9e-53	13	126	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 e ++rwlk+ e++ iLen+e+h+lt++ ++rp+sgsl L+n++++++frkDG+sw+k+kd kt+ E+he+LKvg+ e+l+c Ote100211060061\|100211060061 13 EaQTRWLKPAEVYFILENYEEHQLTHQIPQRPTSGSLYLFNKRVLKFFRKDGHSWRKRKDQKTIAEAHERLKVGNAEALNC 93 5599*************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhyle 116 yYah+eenp+fqrr+yw+L+ + e+ivlvhy++ Ote100211060061\|100211060061 94 YYAHGEENPNFQRRSYWMLDPASEHIVLVHYRD 126 *****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.945	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.6E-72	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-47	13	126	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.1E-8	371	453	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.5E-10	371	454	IPR002909	IPT domain
SuperFamily	SSF81296	7.38E-19	371	455	IPR014756	Immunoglobulin E-set
CDD	cd00102	1.45E-4	371	456	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.0E-17	553	659	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.67E-15	554	659	No hit	No description
SuperFamily	SSF48403	7.46E-17	560	661	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.29	567	659	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.5E-8	575	660	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.22	600	632	IPR002110	Ankyrin repeat
SMART	SM00248	5.2E-4	600	629	IPR002110	Ankyrin repeat
SMART	SM00248	3300	639	668	IPR002110	Ankyrin repeat
SMART	SM00015	13	717	739	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.852	718	747	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	3.72E-8	775	825	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	1.6	777	799	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	778	807	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0036	780	798	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.0E-4	800	822	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.901	801	826	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.6E-5	803	822	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MQSGYDINIL AREAQTRWLK PAEVYFILEN YEEHQLTHQI PQRPTSGSLY LFNKRVLKFF 60 RKDGHSWRKR KDQKTIAEAH ERLKVGNAEA LNCYYAHGEE NPNFQRRSYW MLDPASEHIV 120 LVHYRDIREK SGSSSQPPTL SSSIFSPSPT SFVSEVPDSS FVIGESYNNE SSPNSVEINS 180 SQIVINRAMN QSEERTNEVS SSSEPDLSQA LRRIEQQLSL NDDEVTVYNG YYFENEDSND 240 LDVMREYELS GLTANGRGNS LPLQSGHDLS VEKIQQQQQH QLPATEVDIW KEMLDSPENL 300 PKVESPAQFG GQHTSASILQ EVDPLYHPYS PIPHTYGNTT NCNSPLFYQD ELGISLENNI 360 SLTIAQKQKF TIREISPEWC YTSEGTKIII IGSFYCDRSQ CEWACMIGDI EVPVRIIQEG 420 VLCCYAPPHL QGKVNICITS GNREACSEVR EFEYRTKSDV CTQSNLPGTE PYKNPEELVS 480 LVRFAQMLLS DEQQKEDASE SRNDISGKST ISEDSCSQVI DALLIGTSTS SCTLDWLLQE 540 LLKDKLEVWL SSKLQKNNDK VCSLSKKEQG IIHMVAILGF EWALQPILNS GVSVNFRDHN 600 GWTALHWAAR FGREKMVAAL IASGASAGAV TDPKAQDPTG KTPASIAAAF GHRGLAGYLS 660 EVALTSHLSS LTLEESELSK GCAALEAEKT VNSISKENSS EFEDQDSLRQ TLAAVRNAAQ 720 AAARIQSAFR AHSFRKRQHK GGTITFAGAD GDELTFLEND IPGISAASKL AFGSARDYNS 780 AALSIQKKYR GWKSRKDFLS LRQKVVKIQA HVRGYQVRKN YKVCWAVGIL EKVVLRWRRR 840 GVGLRGFRPD LESIDESDDE DILRVFRKEK VESAIDEAVS RVLSMVESPD ARQQYHRILG 900 KYRQAKAELG NNESDTASSD LRNDNAVSTM ENDEMYQLT

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MQSGYDINIL AREAQTRWLK PAEVYFILEN YEEHQLTHQI PQRPTSGSLY LFNKRVLKFF  60
RKDGHSWRKR KDQKTIAEAH ERLKVGNAEA LNCYYAHGEE NPNFQRRSYW MLDPASEHIV  120
LVHYRDIREK SGSSSQPPTL SSSIFSPSPT SFVSEVPDSS FVIGESYNNE SSPNSVEINS  180
SQIVINRAMN QSEERTNEVS SSSEPDLSQA LRRIEQQLSL NDDEVTVYNG YYFENEDSND  240
LDVMREYELS GLTANGRGNS LPLQSGHDLS VEKIQQQQQH QLPATEVDIW KEMLDSPENL  300
PKVESPAQFG GQHTSASILQ EVDPLYHPYS PIPHTYGNTT NCNSPLFYQD ELGISLENNI  360
SLTIAQKQKF TIREISPEWC YTSEGTKIII IGSFYCDRSQ CEWACMIGDI EVPVRIIQEG  420
VLCCYAPPHL QGKVNICITS GNREACSEVR EFEYRTKSDV CTQSNLPGTE PYKNPEELVS  480
LVRFAQMLLS DEQQKEDASE SRNDISGKST ISEDSCSQVI DALLIGTSTS SCTLDWLLQE  540
LLKDKLEVWL SSKLQKNNDK VCSLSKKEQG IIHMVAILGF EWALQPILNS GVSVNFRDHN  600
GWTALHWAAR FGREKMVAAL IASGASAGAV TDPKAQDPTG KTPASIAAAF GHRGLAGYLS  660
EVALTSHLSS LTLEESELSK GCAALEAEKT VNSISKENSS EFEDQDSLRQ TLAAVRNAAQ  720
AAARIQSAFR AHSFRKRQHK GGTITFAGAD GDELTFLEND IPGISAASKL AFGSARDYNS  780
AALSIQKKYR GWKSRKDFLS LRQKVVKIQA HVRGYQVRKN YKVCWAVGIL EKVVLRWRRR  840
GVGLRGFRPD LESIDESDDE DILRVFRKEK VESAIDEAVS RVLSMVESPD ARQQYHRILG  900
KYRQAKAELG NNESDTASSD LRNDNAVSTM ENDEMYQLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831652.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2G9H1X5	0.0	A0A2G9H1X5_9LAMI; Uncharacterized protein
STRING	Migut.E00009.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]