PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100210890011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 274aa MW: 31818.7 Da PI: 7.4714

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100210890011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.2	4.4e-18	127	206	2	84
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W++ e+ Li++r+ m+ +++ rg +++ Wee+++km g rs Ckekw+++n++ k+ + +k+ +s++c+y Ote100210890011\|100210890011 127 WPECEINRLIQLRTAMDAKFQqRGVAEEVIWEEIAAKMTCFGHDRSGMSCKEKWDSINNYVLKCSKKRKE----NSKSCAY 203 ******************9458899**********************************99998....4788* PP trihelix 82 fdq 84 f++ Ote100210890011\|100210890011 204 FHS 206 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-13	126	208	No hit	No description
PROSITE profile	PS50090	6.748	127	184	IPR017877	Myb-like domain
CDD	cd12203	1.44E-15	127	186	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MKKRGGWKVK IKDFIDAQMK KLMEKQEAWM EKMMRTIEDK ERERMMREEE WRKQDAARIE 60 REHKFWANER AWIEARDVAL MDALHKLTSK ESRGEEAMAA EIRSLSENHN DDGSETMTNT 120 AKGGDIWPEC EINRLIQLRT AMDAKFQQRG VAEEVIWEEI AAKMTCFGHD RSGMSCKEKW 180 DSINNYVLKC SKKRKENSKS CAYFHSHESI SSQVGGGVNY CDNXXXXXXX XXXXXXXXXX 240 LNHDQGSSSP NRNAAAAISE SCFRYFMGDA YGRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	1e-127	trihelix transcription factor PTL
TrEMBL	A0A2G9G8M2	1e-110	A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRING	VIT_08s0007g03820.t01	1e-100	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51