PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100210310061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 454aa    MW: 51876.3 Da    PI: 5.6166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100210310061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.8e-2089129747
                                   HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                        SRF-TF   7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 
                                     rqvt+ kRr+gilKKA+E+SvLCd+ + +i+fs++gk  
  Ote100210310061|100210310061  89 NSRQVTYGKRRAGILKKAQEISVLCDIPIVLIMFSPSGKPS 129
                                   579***********************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.95575135IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-3075134IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-2576162IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-177797IPR002100Transcription factor, MADS-box
PfamPF003199.6E-1789129IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-1797112IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-17112133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
HRNYLLYSYS DSIVRLFSLC IEILKHTSPS HIHRIHHSFD FCFIIFNPSF VEIQDYCWIV  60
SANCRIFFQD LTPRMGRVKL KIQRLETLNS RQVTYGKRRA GILKKAQEIS VLCDIPIVLI  120
MFSPSGKPSI FCSQRSNIDE MIAKYAQLTP KERAKSTPSV EEXXXXXELG HFKLNVLNWW  180
ANPDKIEDIE HLNQMENSLR ESLNRACINK ENILKDPVVQ FDCTGQVCGD YGTVYEQELP  240
KPQFQNIMHF PLETTSEQDC TNQSWLPDGE GQHMMLPSEP QFLASRDIEC SRDASFRACA  300
SYFSDGREQD LDSSRQVKNE RLDGLTIDDY TYSSQLKLPF GDQYPYHSFG NLSFPELMEP  360
GKDTNFQLSS LDYQINGNFD LPRSVCNNFP PSLVPTAGPC AISMLNDNSY PQVSASYFTG  420
SERCCNRSSN GPFPVTLCWT TNPKNANIAN LPAE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071696.11e-159agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A4D9C5E80.0A0A4D9C5E8_SALSN; Uncharacterized protein
STRINGMigut.I00190.1.p1e-147(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124