PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100209250051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 500aa    MW: 56210.1 Da    PI: 6.6122
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100209250051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23199252155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   k+r++Wt +LH++Fv+av+ + G ek  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Ote100209250051|100209250051 199 KARVVWTVDLHQKFVKAVNLI-GFEKVGPKKILDLMGVPWLTRENVASHLQKYRL 252
                                   68*****************99.9*******************************8 PP
2Response_reg61.93.3e-21201421109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.........HHHH......ESEEEEESSCTTSEHHHHHHHHH CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.........kekd......pDlillDiempgmdGlellkeir 66 
                                   vl+vdD+p+ +++l+++l+k +yee+++      + ++          ++++      +D+++ D++mp+mdG++ll++  
  Ote100209250051|100209250051  20 VLVVDDDPTWLKILEKMLKKCNYEECQVLILHNIVTDKYlpigeecfiENHRavrkdgYDIVISDVNMPDMDGFKLLEHVG 100
                                   89*****************999988887666555555555555555564444777888**********************6 PP

                                   HHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  67 eeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                    e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Ote100209250051|100209250051 101 LEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 142
                                   644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.7E-3617163No hitNo description
SuperFamilySSF521721.32E-2717152IPR011006CheY-like superfamily
SMARTSM004481.2E-2118144IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.29819148IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1820143IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.04E-2521148No hitNo description
Gene3DG3DSA:1.10.10.603.0E-27196257IPR009057Homeodomain-like
PROSITE profilePS512949.095196255IPR017930Myb domain
SuperFamilySSF466896.09E-17197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21199252IPR006447Myb domain, plants
PfamPF002491.1E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDSSGFSSPR PDCFPAGLRV LVVDDDPTWL KILEKMLKKC NYEECQVLIL HNIVTDKYLP  60
IGEECFIENH RAVRKDGYDI VISDVNMPDM DGFKLLEHVG LEMDLPVIMM SVDGETSRVM  120
KGVQHGACDY LLKPIRMKEL RNIWQHVFRK RIHEMMRSAA ELSDDGYFFG TDFVPGKKRK  180
DLDNKNDDRA CGDPSNSKKA RVVWTVDLHQ KFVKAVNLIG FEKVGPKKIL DLMGVPWLTR  240
ENVASHLQKY RLYLSRLQKE NDMKASLVGT KPSDLTPKDL AGNLCSPKIC EGNVKANLSS  300
IPITEPKTAS LSNDLAKSSS SSISFDHSFC PSKPHGGAPH APFKHEQTAR SRVPPLHFKP  360
VETSLNRGTE SKPSPSYSEK VTKVESTAAL FSVQPQSHAI DPIPTSIWNT KSQSLEQNLF  420
EDTESWHRNA IFGSGFSEFS PQTDVYPPYP YLGGIDTFSF SNQDLIGDVP SHLYDLLKFN  480
LEFPIDLVEY PVIDQGVYIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17198257463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.10.0two-component response regulator ORR26
SwissprotQ5N6V81e-108ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A4D9APR90.0A0A4D9APR9_SALSN; Two-component response regulator ARR-B family
STRINGXP_009793670.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]