PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100209250011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 279aa MW: 31453.2 Da PI: 8.4565 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G +W+++++ g+ R++k+c++rw +yl Ote100209250011|100209250011 14 RGPWTIEEDNKLMNFILNNGIQCWRLVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.357 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-7 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.32E-18 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.94E-6 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 65 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:2.60.40.790 | 1.8E-31 | 132 | 278 | IPR008978 | HSP20-like chaperone |
SuperFamily | SSF49764 | 4.04E-28 | 160 | 272 | IPR008978 | HSP20-like chaperone |
PROSITE profile | PS01031 | 20.244 | 182 | 266 | IPR002068 | Alpha crystallin/Hsp20 domain |
CDD | cd06464 | 8.89E-25 | 182 | 266 | No hit | No description |
Pfam | PF00011 | 3.1E-21 | 182 | 279 | IPR002068 | Alpha crystallin/Hsp20 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRQPCCEKN GVKRGPWTIE EDNKLMNFIL NNGIQCWRLV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAL SEAEEELIID LHSRLGNSPP ISGPKIAAKA AGGDARENLD HLQRQNKPPK 120 IRTAPVAPIG LWDRFPTART VQQMMETMER MMEDPPAYGS AWPSASTPAE TASYGRGRMP 180 WEIKEAETEY KLRFDMPGMT REDVRVWVEE KMLVVKAEKV PGENVNGGNE WSDGKYSSRI 240 ALPENVEFEK IKAEVKDGVL YITIPKASSE AKVFDISVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5nms_A | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_C | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_D | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_G | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_I | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
5nms_J | 2e-33 | 131 | 279 | 1 | 143 | 25.3 kDa heat shock protein, chloroplastic |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022151874.1 | 2e-85 | small heat shock protein, chloroplastic-like | ||||
TrEMBL | A0A2G9I9G6 | 8e-84 | A0A2G9I9G6_9LAMI; Uncharacterized protein | ||||
STRING | XP_002515014.1 | 6e-84 | (Ricinus communis) |