PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100209040081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 264aa    MW: 28693.3 Da    PI: 10.3938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100209040081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-162264447
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  WT+eEd+ll  +v+ +G+  W++Ia+++  gRt+k+c+ rw++ 
  Ote100209040081|100209040081 22 WTPEEDKLLTALVQIHGPVKWDKIAAHIH-GRTGKSCRIRWLNQ 64
                                  *****************99**********.***********996 PP
2Myb_DNA-binding422.2e-1372113245
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                    ++T eE  +l+ + ++lG++ W+tI ++++ gRt++q+k+ ++
  Ote100209040081|100209040081  72 TPFTLEEKRRLIMLQRELGNR-WSTIVNHFP-GRTDNQVKNQYH 113
                                   69*******************.*********.*********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7771469IPR017930Myb domain
SMARTSM007172.4E-131867IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-2819112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-242172IPR009057Homeodomain-like
CDDcd001673.44E-152263No hitNo description
PfamPF002493.5E-152264IPR001005SANT/Myb domain
SMARTSM007176.1E-1170118IPR001005SANT/Myb domain
PROSITE profilePS5129413.02771120IPR017930Myb domain
PfamPF002496.8E-1171113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-1873113IPR009057Homeodomain-like
CDDcd001676.23E-1073113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATFGGSGRT NRKREHNSKW HWTPEEDKLL TALVQIHGPV KWDKIAAHIH GRTGKSCRIR  60
WLNQLNPGVD KTPFTLEEKR RLIMLQRELG NRWSTIVNHF PGRTDNQVKN QYHILAGTRH  120
MKAAAAAAGS SSCNDPHENN RSGGLSQNPN ISMGPVNSQF SDVTSRGTNS HGFAPKFPAM  180
PGSGRVEMRP SSFAGSSSVY GKGKSPSQVG APSSMLSSLG PRPFEKPSYG SSMISDANSA  240
TIQGLSDEIN VCILMECVAA NDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-2722112797MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-2722112797C-Myb DNA-Binding Domain
1msf_C9e-2722112797C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059PRJ91e-102A0A059PRJ9_SALMI; MYB-related transcription factor
STRINGMigut.H00704.1.p5e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1678945