PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100208250021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30436.5 Da PI: 7.5314 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.2 | 7.1e-49 | 26 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k............kvkaeekewyfFskrdkkya 69 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp k + +ekewyf+++rd+ky+ Ote100208250021|100208250021 26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPgKlidihasgxxxxXXAIGEKEWYFYVPRDRKYR 105 79***************************.89***************658999888877764445999************* PP NAM 70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Ote100208250021|100208250021 106 NGDRPNRVTTSGYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 164 *********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.636 | 25 | 192 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-51 | 25 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-25 | 27 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAIAATMNNQ EDTNSKQDEH ENDVVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL 60 DLYRYDPWEL PGKLIDIHAS GXXXXXXAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRS ENFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPHHDTE RLQKPSSNAI 180 DDLHKLVHNY SSSHHQSAAA INHETHQNHF NSNNPTNVPN LLSHFAVSQL PQPPEAAVYS 240 DRLWEWNAMP EGSKDFSNMF K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 27 | 194 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 27 | 194 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 27 | 194 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 27 | 194 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 27 | 194 | 22 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 27 | 194 | 19 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 27 | 194 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087598.1 | 1e-105 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 4e-87 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2U5GF65 | 1e-104 | A0A2U5GF65_SALMI; NAC transcription factor 5 | ||||
STRING | XP_004301581.1 | 8e-97 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Publications ? help Back to Top | |||
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