PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100205040001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 365aa    MW: 40792.6 Da    PI: 4.8306
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100205040001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS107.61.8e-33155257169272
                          GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                   A+++gvpfef++ v+ +  ++e ++L ++pgEalaVn+++ lh+++desv ++++rd++L++vkslsP+vv++ve+e+++n
  Ote100205040001|100205040001 155 ARSCGVPFEFHP-VSISSCEVESRHLGLRPGEALAVNFAMTLHHTPDESVGVQNHRDRLLRMVKSLSPRVVTLVEHESNTN 234
                                   99**********.577888999*********************************************************** PP

                          GRAS 250 sesFlerflealeyysalfdsle 272
                                   +++F+ rf+++leyy a+fds++
  Ote100205040001|100205040001 235 TAPFVIRFAHTLEYYLAVFDSID 257
                                   *********************97 PP
2GRAS742.8e-23258328302373
                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   g er+erhe l+kWr r+++aGF+p+pls+++++++k+ll++++++ yr++e++g+l+lgW++r Lv+ +aW
  Ote100205040001|100205040001 258 GLERVERHEPLGKWRLRFSMAGFSPYPLSSYVNATIKTLLANYSKK-YRLQERDGCLFLGWMNRDLVTSCAW 328
                                   669*****************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.241310IPR005202Transcription factor GRAS
PfamPF035146.1E-31155257IPR005202Transcription factor GRAS
PfamPF035149.7E-21258328IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAFQNYDDFG GSGQTLEELD SYLLDPSYNL DSCIKSGAYN QVSHFSVQTY DQKNCAFEPS  60
TFSFSSNGSS GTHPDCLSDS TNNDVYANNT LPITTSYGID CFNDLKNDSL VEASAAMPPS  120
VEGEFESSVV EISMVSVSGD PLQRLGAYML EGLVARSCGV PFEFHPVSIS SCEVESRHLG  180
LRPGEALAVN FAMTLHHTPD ESVGVQNHRD RLLRMVKSLS PRVVTLVEHE SNTNTAPFVI  240
RFAHTLEYYL AVFDSIDGLE RVERHEPLGK WRLRFSMAGF SPYPLSSYVN ATIKTLLANY  300
SKKYRLQERD GCLFLGWMNR DLVTSCAWVE DLERKTTLPE WGPPRCRRAR ALSWDLGGDH  360
FDLQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-24155328171374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022038892.13e-88scarecrow-like transcription factor PAT1
RefseqXP_022038893.13e-88scarecrow-like transcription factor PAT1
SwissprotQ8H1252e-78SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A4D9AKH17e-92A0A4D9AKH1_SALSN; Uncharacterized protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]