PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100205000051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 445aa MW: 49085.2 Da PI: 6.4387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100205000051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	273	320	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h Er+RR++i ++f L +++P+ +K++K++iL +++eY+++L+ Ote100205000051\|100205000051 273 RNHVLSERKRREKISERFTILGSIVPSG-----GKVDKVSILDHTIEYLRELE 320 579999******************98.....8**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-9	17	55	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.872	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-10	273	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.67E-12	273	322	No hit	No description
SuperFamily	SSF47459	6.94E-15	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-15	274	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MNSVECTNLF CLLDFHVVNA QTVVCFPHLG GVVELGTTEL VPEDRSLIQH IKTSFLETSS 60 DIVTKPKHDL VVYQLPDHSS IPETNLDDAE VRSRDTSSDD FADNVLIEGS SVADGVEGEA 120 ASQLQSWPFK EDAGRNNSTS SSDCVSQTRG NLELNGKKTS DSCMPVNQEC NPQNNSGFNG 180 GDVHYQSVLS SLLKTSHQLI LGPYRNGSRE SSFISWKDRN LNAHLPQCLS PQRLLKKVLF 240 EVAKMHENAR AESVKQKDKC DDQSGQEADE VDRNHVLSER KRREKISERF TILGSIVPSG 300 GKVDKVSILD HTIEYLRELE RKTIMAKASL AASLSXXXXG NKRKACDVEK MAAENKRARS 360 NSSTDSITIS ITDKDVLIEM RCSWKQCVLL EVMEALNQLN LDSQSVQSSN TDGILSLSIN 420 AKSKGLKGAS ASAIKQALQR IIRKC

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MNSVECTNLF CLLDFHVVNA QTVVCFPHLG GVVELGTTEL VPEDRSLIQH IKTSFLETSS  60
DIVTKPKHDL VVYQLPDHSS IPETNLDDAE VRSRDTSSDD FADNVLIEGS SVADGVEGEA  120
ASQLQSWPFK EDAGRNNSTS SSDCVSQTRG NLELNGKKTS DSCMPVNQEC NPQNNSGFNG  180
GDVHYQSVLS SLLKTSHQLI LGPYRNGSRE SSFISWKDRN LNAHLPQCLS PQRLLKKVLF  240
EVAKMHENAR AESVKQKDKC DDQSGQEADE VDRNHVLSER KRREKISERF TILGSIVPSG  300
GKVDKVSILD HTIEYLRELE RKTIMAKASL AASLSXXXXG NKRKACDVEK MAAENKRARS  360
NSSTDSITIS ITDKDVLIEM RCSWKQCVLL EVMEALNQLN LDSQSVQSSN TDGILSLSIN  420
AKSKGLKGAS ASAIKQALQR IIRKC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072770.1	1e-167	transcription factor EGL1-like
TrEMBL	Q9SLX2	0.0	Q9SLX2_PERFR; MYC-GP
STRING	Migut.E01090.1.p	1e-124	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4576	24	35