PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100204310061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 1299aa    MW: 147253 Da    PI: 6.4607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100204310061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS87.42.3e-273194391124
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+ v+++d + a + L+++ +++s++gd +qRla +f+ +L+arl ++++e+y++l+ ++ +    +e+l+a+
  Ote100204310061|100204310061 319 LRTLLISCAQSVAADDRKTAYEQLKQIMKHSSQTGDVNQRLAYVFATGLEARLCGTGTEVYASLTRRKIT---AVEKLKAF 396
                                   6789*********************************************************999999998...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                                   +++ ++sP+ k+s   aN++I   +++++++HiiDf+i +G+Q
  Ote100204310061|100204310061 397 QVYLKASPFKKLSISFANKMIASVASQATALHIIDFGILYGFQ 439
                                   ******************************************9 PP
2GRAS197.86.6e-61441656155371
                          GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                   +e++eetg+rLak++e++gvpf++++++a+++e+++l++L++++gE+laVn+ +q  rllde+v ++s+rd+vL+l+k+++
  Ote100204310061|100204310061 441 AERVEETGRRLAKYCERFGVPFQYHAIAAQNWETIKLKDLNIESGEVLAVNSLFQFNRLLDETVMVDSQRDAVLNLIKKIK 521
                                   6899***************************************************************************** PP

                          GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                   P+++v +  + + n++ F++rf eal +ysalfd+++a+lpre+ +ri  E+ + gre+ nvvaceg+er+er et+++W+
  Ote100204310061|100204310061 522 PDIFVNAVTNGSFNAPFFVTRFREALFHYSALFDMFDATLPRENPQRIDFEQDFYGREAINVVACEGSERVERPETYKQWQ 602
                                   ********************************************************************************* PP

                          GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                                    r ++aGFkpvpl++ + k+ ++  + ++sd +  +e+  ++++gWk+r + + S
  Ote100204310061|100204310061 603 VRHMRAGFKPVPLDDGILKKYRHKGAAYHSD-FLYDEDGCWFLQGWKGRVICASS 656
                                   *****************************88.99999999999******999887 PP
3GRAS229.31.8e-7093211911260
                          GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79  
                                    l++lL++cA+av++ d + ++ lL+++++++sp+gd m Rl++yf++AL  rla++++  y a++ ++ s    +e l 
  Ote100204310061|100204310061  932 LRNLLMQCAQAVAAYDSRTVNDLLSKIRQHSSPHGDGMDRLTHYFAKALDVRLAGTGTAAYTAFSNTRIS---AAEILR 1007
                                    689****************************************************999999999888887...89**** PP

                          GRAS   80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156 
                                     +++f e++P+ k+s+  aN++I + +++++++HiiDf+i +G+QWp+L+q+L++Rp+gpp+lRiTg++ p++g   +e
  Ote100204310061|100204310061 1008 GYQTFIEACPFKKMSNSYANRTIRKLADSAHTLHIIDFGILYGFQWPCLIQTLSERPGGPPKLRITGIDFPQPGfrPAE 1086
                                    *************************************************************************9***** PP

                          GRAS  157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl..vlqlhrlldesvsleserdevLklvks 233 
                                    ++e tg+rLa+++e++gvpfefn+ +a+++e+++le+L +++ E             +++de+v ++s+rd+vL+l+k+
  Ote100204310061|100204310061 1087 RVEDTGNRLARYCERFGVPFEFNA-IAQKWETIKLEDLMINKSELXXXXXxxXXXXXNVPDETVVVNSPRDAVLNLIKK 1164
                                    ************************.7****************99877655115678899******************** PP

                          GRAS  234 lsPkvvvvveqeadhnsesFlerflea 260 
                                    ++P+++++   +  +n++ Fl+rf e 
  Ote100204310061|100204310061 1165 INPDLFIHGIVNGTYNTPFFLTRFREX 1191
                                    ************************996 PP
4GRAS34.33.3e-1112361295315374
                          GRAS  315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                                    W++r  +aGF+++pl+++++k ++  +++ + + ++v+e+ +++++gWk+r L ++S W+
  Ote100204310061|100204310061 1236 WQMRNVRAGFRQLPLDQEIVKYVRNKVKRNYHKDFSVDEDGKWMLQGWKGRVLHAISYWK 1295
                                    *******************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.643293640IPR005202Transcription factor GRAS
PfamPF035148.1E-25319439IPR005202Transcription factor GRAS
PfamPF035142.3E-58441656IPR005202Transcription factor GRAS
PROSITE profilePS5098545.6379061275IPR005202Transcription factor GRAS
PfamPF035146.2E-689321191IPR005202Transcription factor GRAS
PfamPF035141.1E-812361295IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1299 aa     Download sequence    Send to blast
MLVFCMIRKF QPSILMDPWF SEIPNTPDEF RFDYGSFFSS YETKLDPLDM PLPSISPAPD  60
NFAPSSNASD EAESPDDPES DPVLRFLNQI LGEEDLEEKP SMFHDPLALR AAEKSLYDVI  120
GQKYPPSPSY PGSYGDQKPD SPSSLFGSSS EYASSSNAGS GSNIDPQWIV DPGEHIQNLF  180
SDSESVLQFK RGMEEASRFL PSSNQLIINL DRYELPQKSE DVSPPVVIEA QKRKHQHLDN  240
GDSGEIERSS KQFATNVEDV ELSEMFDRVL LCTVDKDECG NSGTEFQCAA SLPELVPNES  300
NRRRNRAKKN EMKGDSVDLR TLLISCAQSV AADDRKTAYE QLKQIMKHSS QTGDVNQRLA  360
YVFATGLEAR LCGTGTEVYA SLTRRKITAV EKLKAFQVYL KASPFKKLSI SFANKMIASV  420
ASQATALHII DFGILYGFQP AERVEETGRR LAKYCERFGV PFQYHAIAAQ NWETIKLKDL  480
NIESGEVLAV NSLFQFNRLL DETVMVDSQR DAVLNLIKKI KPDIFVNAVT NGSFNAPFFV  540
TRFREALFHY SALFDMFDAT LPRENPQRID FEQDFYGREA INVVACEGSE RVERPETYKQ  600
WQVRHMRAGF KPVPLDDGIL KKYRHKGAAY HSDFLYDEDG CWFLQGWKGR VICASSFQGY  660
LAPANDFQMN YRSRSVFPEE NHVLGRKLSL VNASSSEDSS FEDGISVSPT EASRNEGSSP  720
SSSSDGETPK ENDHSDAILK YISMMLMEEE DLEKKPCMLH DCLALQAKEK SFYNVLTNKN  780
LDQNGDDFNQ TSSLDSGASS SDISSFLESS WSDNLREFEP LILPSQIELQ SHLQPPEYLT  840
VPINQSSRGK KHRHREEIDS AEDRRSTKQL ANNVAESGSL EMFDKVLLCS NTENPMDSAR  900
DEKKKWPQAK GSGRGRPKGG KKQTVIKEVV DLRNLLMQCA QAVAAYDSRT VNDLLSKIRQ  960
HSSPHGDGMD RLTHYFAKAL DVRLAGTGTA AYTAFSNTRI SAAEILRGYQ TFIEACPFKK  1020
MSNSYANRTI RKLADSAHTL HIIDFGILYG FQWPCLIQTL SERPGGPPKL RITGIDFPQP  1080
GFRPAERVED TGNRLARYCE RFGVPFEFNA IAQKWETIKL EDLMINKSEL XXXXXXXXXX  1140
XXNVPDETVV VNSPRDAVLN LIKKINPDLF IHGIVNGTYN TPFFLTRFRE XXXXXXXXXX  1200
XXXXXXSTSR RCSTCSRRRW TGKIRTGYCL RRRCLWQMRN VRAGFRQLPL DQEIVKYVRN  1260
KVKRNYHKDF SVDEDGKWML QGWKGRVLHA ISYWKPAHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3032311888330GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XE581e-169SCL14_ARATH; Scarecrow-like protein 14
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]