PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100203900141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21414.6 Da PI: 5.6975 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.4e-43 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r+da++s+vyeA+ar+rdPvyG++g i Ote100203900141|100203900141 40 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEDQRPDAVNSMVYEANARLRDPVYGCAGAIC 120 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+aela++++e Ote100203900141|100203900141 121 HLQKQINELQAELAKAQAE 139 ***************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.653 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-43 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGYNGNTTAG AAAAAAEALS PTTPLSPPAS PPSPRVILSP CAACKILRRR CVEKCVLAPY 60 FPPTEPLKFT IAHRVFGASN IIKLLQELPE DQRPDAVNSM VYEANARLRD PVYGCAGAIC 120 HLQKQINELQ AELAKAQAEI LNIQCQNTNL IELICKQMTA KNNEDNLQQQ SMSFHENSGF 180 LLDENILGVA WDPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-44 | 39 | 160 | 10 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-44 | 39 | 160 | 10 | 131 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834486.1 | 2e-87 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-77 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D9AES9 | 5e-99 | A0A4D9AES9_SALSN; Uncharacterized protein | ||||
STRING | Migut.F02029.1.p | 7e-89 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |