PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100203760091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 269aa    MW: 30646.4 Da    PI: 10.0637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100203760091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09535131
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                                  +++WT+eE+e l+ +v ++G g Wk I    
  Ote100203760091|100203760091  5 KLKWTAEEEEALIAGVVKYGAGKWKNILLDS 35
                                  689***********************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.709153IPR017930Myb domain
SuperFamilySSF466892.94E-10250IPR009057Homeodomain-like
PfamPF002494.8E-6532IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-9550IPR009057Homeodomain-like
CDDcd116602.58E-13750No hitNo description
PROSITE profilePS5150421.67666134IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.04E-1367143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.7E-1067129IPR005818Linker histone H1/H5, domain H15
PfamPF005381.6E-971126IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.1E-1271145IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGNHKLKWTA EEEEALIAGV VKYGAGKWKN ILLDSEFKHK LANRSNVDLK VLQSSKFPWR  60
FNSELAIQRH NEMILEALSS IKDRDGSDFV SIMRFIEKKY EVPPNFRRLM STKLRKLVIQ  120
GKVEKIQKRY KIKHASLGTK TPTPKQKVVR LKPKRESRPS ISTEIEEASR TAAQKIAEAE  180
DKSFLAAEAV KESERLSQMA EDADALVMHL IQLFEQWKDE PDNSKTKNSQ AEAKSGSAII  240
LSKVDCEGVG RKMYILLVFA ELHFENGSC
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079943.11e-79telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L14e-42TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A4D9BEK22e-97A0A4D9BEK2_SALSN; Myb proto-oncogene protein, plant
STRINGXP_004510409.11e-65(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]