PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100202550031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19847.7 Da PI: 5.1907 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.6e-38 | 33 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanv...hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++ ++FGasn++k+l++lpe +r da+ss+vyeA+ar+r+PvyG++g Ote100202550031|100202550031 33 PCAACKILRRRCVEKCVLAPYFPPHDPLKFTIAxxxXRVFGASNIIKFLQELPEGQRADAVSSMVYEANARLREPVYGCAG 113 7**************************99988633369******************************************* PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lq+++++l+++la++++e Ote100202550031|100202550031 114 LIFQLQKHVNELQEQLAKAQAE 135 ******************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.009 | 32 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-38 | 33 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEGSDTTTVT TAASPSPSSL SSPPTPQCVV ISPCAACKIL RRRCVEKCVL APYFPPHDPL 60 KFTIAXXXXR VFGASNIIKF LQELPEGQRA DAVSSMVYEA NARLREPVYG CAGLIFQLQK 120 HVNELQEQLA KAQAELVNVH CQNANLMAII SQTLLLHNDD DTSSFWDEGS MGFSCEQALW 180 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 32 | 141 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 32 | 141 | 10 | 116 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090094.1 | 3e-74 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 5e-62 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D8YX18 | 9e-74 | A0A4D8YX18_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 1e-69 | (Populus trichocarpa) | ||||
STRING | XP_009610820.1 | 8e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |