PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100202400041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 633aa    MW: 70247.8 Da    PI: 6.6392
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100202400041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10212268155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Ote100202400041|100202400041 212 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 268
                                   57*******************5444.2455535555.7799999*************98 PP
2AP247.64e-15311362155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ote100202400041|100202400041 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 362
                                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-18212278No hitNo description
PfamPF008473.3E-8212268IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-14212278IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-11213277IPR001471AP2/ERF domain
SMARTSM003805.8E-22213282IPR001471AP2/ERF domain
PROSITE profilePS5103217.108213276IPR001471AP2/ERF domain
PRINTSPR003676.2E-6214225IPR001471AP2/ERF domain
CDDcd000185.26E-25311372No hitNo description
SuperFamilySSF541719.15E-18311371IPR016177DNA-binding domain
PfamPF008478.7E-10311362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-18312370IPR001471AP2/ERF domain
SMARTSM003803.5E-33312376IPR001471AP2/ERF domain
PROSITE profilePS5103219.348312370IPR001471AP2/ERF domain
PRINTSPR003676.2E-6352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MNNNNWLGFS LSPQELQDQT QTSVNPFNSD EISAAQISGE SCFDLPSDSS IPSLNLPAPH  60
FGILEAFNRN PHSQDWNVND VSMNTFSCSS QDLEDQNRPK LENFLGVHQE QKSSNNLYHL  120
NMYQESDTNA GSGNLPMITN WLRNNPAPPH AAENNEPTXX XXXXXXXXQT LSLSMSTGSP  180
TKLGTAEPEA QTGGAIESVP RRSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  240
SRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISNY EKEIEEMKHM TRQEFVASIR  300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF  360
RGLNAVTNFE INRYDVKSIL ESSTLPIRGA AKRLKDAENA EMALDLHRAN ESNLNLHLTE  420
GQMSGYGSSN AHSWPTIAFQ PPQPLSMYPY TAHQMLWCKQ EQDPYGFNEI NHQLQLGSTQ  480
NFLQPSVLHN IMGLDSSSVE HSSGSNSAVY GNVVPIMASQ SHGNGFLGNE EGKNLDYEGM  540
MGSADAYQQA RNMYYHQSQQ SSSNHAKSSS LYDQGSTSTN WVPTAVPTGS ARANNEGGSH  600
GASTFTVSKH LTHTCFVLSL LLQASKIMLG HHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084678.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ8LSN21e-147BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A4D9ASR80.0A0A4D9ASR8_SALSN; AP2-like factor, ANT lineage
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131