PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100202030001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 343aa    MW: 37584 Da    PI: 8.0207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100202030001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-113864127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  ++++ C++f++t  Ck+G rCkF+H++
  Ote100202030001|100202030001 38 PGEPDCPYFLKTQRCKFGVRCKFNHPK 64
                                  5789*********************96 PP
2zf-CCCH40.64.3e-1385109327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   +++C f+++tGtCk+G++CkF+H++
  Ote100202030001|100202030001  85 EPPCAFYMKTGTCKFGPTCKFHHPK 109
                                   79*********************96 PP
3zf-CCCH39.78.2e-13154179126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +++e C+f+++tG CkyG++C+++H+
  Ote100202030001|100202030001 154 PGEEDCPFYLKTGSCKYGATCRYNHP 179
                                   5899*********************9 PP
4zf-CCCH41.32.6e-13237261226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ++ +C+++++tG+Ck+G++CkF+H+
  Ote100202030001|100202030001 237 GQQECDYYMKTGICKFGNNCKFHHP 261
                                   6789********************8 PP
5zf-CCCH37.34.7e-12295316627
                                   -SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                   C+++++tGtCkyG++C+F H+p
  Ote100202030001|100202030001 295 CPYYMKTGTCKYGATCRFDHPP 316
                                   ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-53764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6153765IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-93964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-54266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-54364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.66682110IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-782109IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1085109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-685109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-587107IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61153181IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10155179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5159178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7235264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197235263IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-7235262IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11237261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5241261IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629289317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6293316IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9295316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6295314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSVLSDDHNA RIILFPVMLL RSICEVPLVP SEALPERPGE PDCPYFLKTQ RCKFGVRCKF  60
NHPKDRIVPP FQGEDGDTLP ERPSEPPCAF YMKTGTCKFG PTCKFHHPKG VQIQSTGEEN  120
INGLQNIMLG DMKASQTPFA PALLHNTKGL PVRPGEEDCP FYLKTGSCKY GATCRYNHPD  180
RYAINPPTAV TPTLLTSPAA HFNLGVVAPT LSLLPNSDPR FTQTVGLTPT IYPQRPGQQE  240
CDYYMKTGIC KFGNNCKFHH PIDRSAPTAS ATESPQQNVK LTLAGLPRRE GAIHCPYYMK  300
TGTCKYGATC RFDHPPPGEV MAMATPQVGS SSAAGETKEN GDV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554067.11e-179zinc finger CCCH domain-containing protein 37
RefseqXP_022856887.11e-179zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-127C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2G9HTQ00.0A0A2G9HTQ0_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.M01488.1.p1e-164(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125