PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100202020161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ARF | ||||||||
Protein Properties | Length: 816aa MW: 90472.6 Da PI: 6.8563 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.6e-24 | 191 | 292 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L Ote100202020161|100202020161 191 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIATDLHGVEWKFRHIYRGQPRRHLLTTGWSLFVSQKNLV 270 99****************************86333.45679**************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD v+F + + +el+++++r+ Ote100202020161|100202020161 271 AGDAVLFL--RGEVGELRLGIRRA 292 ********..4499999****996 PP | |||||||
2 | Auxin_resp | 105.2 | 7.7e-35 | 317 | 398 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 +a+a+s++ F+v++ Pras+++F++++ek++k + +++ vG+Rf+m+f+ +ds+err+sG v+gv d+dp+rWp+SkWr+ Ote100202020161|100202020161 317 VANALSSNGSFHVYFTPRASHADFIIPYEKYVKCTASPIPVGTRFRMRFDFDDSPERRFSGAVTGVGDIDPYRWPHSKWRC 397 6899***************************************************************************** PP Auxin_resp 82 L 82 L Ote100202020161|100202020161 398 L 398 9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-44 | 182 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-40 | 185 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-21 | 189 | 291 | No hit | No description |
Pfam | PF02362 | 2.2E-21 | 191 | 292 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 191 | 293 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-24 | 191 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.2E-29 | 317 | 398 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.1 | 660 | 744 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.11E-11 | 662 | 739 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MKILIRNRGH CFDLDSPRSI PVQSIPVQSG HPCKVIFVCI QWKTPIFVVA GASEVEKNDA 60 CFNGGECEGE SSPPSIYVEL WHACAGPLTS LPKKGNVVLY FPQGHLEQAA SASPFPSIDI 120 PTFDLPPQIF CRVIDVRLLA NKENDEVYTQ LSLLPLPELA GVKLDSKETE NSGVDDDENG 180 GKPTKSTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKEQRPSQE LIATDLHGVE 240 WKFRHIYRGQ PRRHLLTTGW SLFVSQKNLV AGDAVLFLRG EVGELRLGIR RAARPRNGLP 300 DSVIKKQSSY PNVLSPVANA LSSNGSFHVY FTPRASHADF IIPYEKYVKC TASPIPVGTR 360 FRMRFDFDDS PERRFSGAVT GVGDIDPYRW PHSKWRCLMV RWDEDIMSNH QERVSPWEID 420 FSGNYAPLSI QSSPRLKKPR SNPHAMTPLG SPIAGGGAVF DFEESVRSSK VLQGQENVGL 480 VSPFYRSDRV NRHLDFGISN RVDKISYGEL VRSHAPANFT GFLESNWFPK VLQGQEICSF 540 KSLAGRSSSN LGYSVHKTPS FYPLASEGSR SMHVPHKSIH TMLSNFSDFQ SRSHLPCPSS 600 ILSGAKADVA ISMERTSPPP TSLMHLKNSE NSLTEKVPTC KIFGFSLTED PISLQGPSKR 660 SCTKVHKQGS LVGRAIDLSR LNGYDDLLTE LERLFSMEGL LRDPNHGWRI LYTDSENDMM 720 VVGDDPWHEF VEVATKIHIY THEEVEKLTI GMNSDDTKSC LEEAPSAADV SKSSSVGQPD 780 SSPTVKTNGE MYVVPSLELL ALQLVMLPIL LVEIGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-117 | 79 | 426 | 22 | 359 | Auxin response factor 1 |
4ldy_B | 1e-117 | 79 | 426 | 22 | 359 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089884.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A191T8T2 | 0.0 | A0A191T8T2_SALMI; Auxin response factor | ||||
STRING | Migut.N02611.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5143 | 22 | 34 |