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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100202020041 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | LBD | ||||||||
| Protein Properties | Length: 90aa MW: 10226.6 Da PI: 4.4334 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 39.5 | 1.6e-12 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+vyeA ar+r+PvyG++g i +lq+q+++l+++la++++e
Ote100202020041|100202020041 1 MVYEASARMREPVYGCAGAICQLQKQVNELQEQLAKAQAE 40
69**********************************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 2.0E-10 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
| PROSITE profile | PS50891 | 9.466 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 90 aa Download sequence Send to blast |
MVYEASARMR EPVYGCAGAI CQLQKQVNEL QEQLAKAQAE LVNLQCQNAN LMALICMEMS 60 SQSLLLQNHD IHQHFPDQTT SFLDEQSLWT |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012838343.1 | 8e-33 | PREDICTED: LOB domain-containing protein 1-like | ||||
| Refseq | XP_016548470.1 | 6e-33 | PREDICTED: LOB domain-containing protein 1-like | ||||
| Refseq | XP_021680496.1 | 9e-33 | LOB domain-containing protein 1-like | ||||
| Swissprot | Q9LQR0 | 4e-20 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
| TrEMBL | A0A2G9GMD1 | 1e-33 | A0A2G9GMD1_9LAMI; Uncharacterized protein | ||||
| STRING | Migut.N02625.1.p | 3e-32 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA43 | 24 | 669 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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