PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100201920051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 305aa MW: 34393.3 Da PI: 7.8962

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100201920051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	9.4e-10	16	61	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ ++ +W+ +a+ ++ g+t ++++ ++ Ote100201920051\|100201920051 16 KWTAEENKKFENALALFDKDtpdRWHNVASLIP-GKTVNDVIKQYRE 61 8******************************.******99986 PP
2	Myb_DNA-binding	25.7	2.7e-08	133	168	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Ote100201920051\|100201920051 133 FLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 168 67789******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.0E-10	13	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-5	15	64	IPR009057	Homeodomain-like
CDD	cd00167	5.59E-9	16	63	No hit	No description
PROSITE profile	PS50090	6.377	16	63	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.59E-12	16	70	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-8	16	62	IPR001005	SANT/Myb domain
SMART	SM00717	0.59	121	171	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.8E-10	131	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.5E-11	132	172	IPR006447	Myb domain, plants
CDD	cd00167	1.33E-5	132	169	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-6	133	168	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-6	133	168	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	4.681	137	169	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MISPSNWLFE DNTVVKWTAE ENKKFENALA LFDKDTPDRW HNVASLIPGK TVNDVIKQYR 60 ELVDDVTDIE AGLIPVPGYA ANSSFTLDWM GADQDCFRGF NHLYTPPAAK RXXXXXXXXX 120 XXXXITSGRR GQFLLGLKKY GKGDWRNISR NFVTTRTPTQ VASHAQKYFI RQLSGGKDKR 180 RSSIHDITTV HLDDAAAPNK DGRDSPEKTS LLVQRSLDNG NDVVVRPKYE SELMTTNQGE 240 IMGFGVSNSN TAAAAFMMSH PSSSLVGLNV HDHFHNDFDH CHGLRLGAHD PIFQMNPTRI 300 HHHHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-17	17	79	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094978.1	1e-112	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-75	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2G9I5K7	1e-108	A0A2G9I5K7_9LAMI; Zuotin
STRING	XP_009786719.1	1e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]