PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100201440011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 171aa    MW: 19029.4 Da    PI: 8.0966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100201440011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18755254
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                                  +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aaka+++a++ + 
  Ote100201440011|100201440011  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARIMC 55
                                  69******9.**********8.....334**********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.44E-33663No hitNo description
PfamPF008473.5E-11755IPR001471AP2/ERF domain
PROSITE profilePS5103220.35764IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-33764IPR001471AP2/ERF domain
SMARTSM003803.3E-37770IPR001471AP2/ERF domain
PRINTSPR003674.5E-11819IPR001471AP2/ERF domain
PRINTSPR003674.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAAKAYDEA ARIMCGSRAR  60
TNFSYDPTNR TSSSSSKLLS ATLMAKLQKC HMTCQSTSKK PALDMMIEGE KMMGFHGENK  120
LGGNDLGGSG SGSGNHVQEL KSVEDDDDDI QQMIQELLHY GSVELSSVTG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17863662ATERF1
3gcc_A2e-17863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082170.13e-72ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-60ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2G9HMB73e-72A0A2G9HMB7_9LAMI; Uncharacterized protein
STRINGBra020490.1-P3e-63(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]